miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 39554 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 39929 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 38805 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 39804 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 39304 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 39429 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 39179 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 39055 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 38930 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 38680 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 38555 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 97403 0.71 0.326144
Target:  5'- cUCCcUUAGCGGgccagguugugggcCGGGUCCAGGGG-CCa -3'
miRNA:   3'- -AGGcGGUCGCC--------------GUCCAGGUCCCCuGG- -5'
33265 5' -63.3 NC_007605.1 + 40390 0.71 0.335308
Target:  5'- cCUGCCAGuCGGCgcgGGGUCCca-GGACCa -3'
miRNA:   3'- aGGCGGUC-GCCG---UCCAGGuccCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 58923 0.71 0.36467
Target:  5'- gUCCaGCUcagGGCGGgAGGU-CAGGGGGCg -3'
miRNA:   3'- -AGG-CGG---UCGCCgUCCAgGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 40222 0.7 0.38783
Target:  5'- gUCC-CCA-UGGCacaggccuagGGGUCCAGGGGGCa -3'
miRNA:   3'- -AGGcGGUcGCCG----------UCCAGGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 159256 0.7 0.395762
Target:  5'- cUCGCCGGCGcGCcuGUCCucccaGGGACCc -3'
miRNA:   3'- aGGCGGUCGC-CGucCAGGuc---CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 49853 0.7 0.411937
Target:  5'- cCCGCguGgGGCGGuGUCguGGGGuuguCCc -3'
miRNA:   3'- aGGCGguCgCCGUC-CAGguCCCCu---GG- -5'
33265 5' -63.3 NC_007605.1 + 162067 0.7 0.411937
Target:  5'- gCCGCgucCAGgucUGGCAGGUCgCAGGuGGGCUc -3'
miRNA:   3'- aGGCG---GUC---GCCGUCCAG-GUCC-CCUGG- -5'
33265 5' -63.3 NC_007605.1 + 99166 0.7 0.411937
Target:  5'- gCCGCCGGCucccGCGccGGU-CAGGGGACg -3'
miRNA:   3'- aGGCGGUCGc---CGU--CCAgGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 91364 0.69 0.420176
Target:  5'- aUCCGaCCGGUucauGGaCAGGUCCuguGGGGGugggaGCCa -3'
miRNA:   3'- -AGGC-GGUCG----CC-GUCCAGG---UCCCC-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.