miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 72422 0.69 0.4541
Target:  5'- aUCCGCgAuGUGGUagcagaAGGUUuuGGGGGCCg -3'
miRNA:   3'- -AGGCGgU-CGCCG------UCCAGguCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 95139 0.69 0.420176
Target:  5'- uUCC-CCAGCGGCcuccAGGUCCAagcagcacugcGGGGucACUg -3'
miRNA:   3'- -AGGcGGUCGCCG----UCCAGGU-----------CCCC--UGG- -5'
33265 5' -63.3 NC_007605.1 + 91364 0.69 0.420176
Target:  5'- aUCCGaCCGGUucauGGaCAGGUCCuguGGGGGugggaGCCa -3'
miRNA:   3'- -AGGC-GGUCG----CC-GUCCAGG---UCCCC-----UGG- -5'
33265 5' -63.3 NC_007605.1 + 49882 0.69 0.427676
Target:  5'- uUCCGgggCGGCGGUggaugagaggaggGGGaUCCggAGGGGACCa -3'
miRNA:   3'- -AGGCg--GUCGCCG-------------UCC-AGG--UCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 100648 0.69 0.428514
Target:  5'- cCCGaCCAG-GGUcuuguacuGGG-CCAGGGGAUCg -3'
miRNA:   3'- aGGC-GGUCgCCG--------UCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 158814 0.69 0.436949
Target:  5'- gCCcauCCGGgGGCAGGgccuggCCGGGGcuGACCg -3'
miRNA:   3'- aGGc--GGUCgCCGUCCa-----GGUCCC--CUGG- -5'
33265 5' -63.3 NC_007605.1 + 47733 0.69 0.44291
Target:  5'- gUCCGCCuacugguugucggaGGUGGagAGGcCCGGGGG-CCu -3'
miRNA:   3'- -AGGCGG--------------UCGCCg-UCCaGGUCCCCuGG- -5'
33265 5' -63.3 NC_007605.1 + 141714 0.69 0.445479
Target:  5'- -gUGCCGGCuGCagccGGGUCCGGGGuuCCg -3'
miRNA:   3'- agGCGGUCGcCG----UCCAGGUCCCcuGG- -5'
33265 5' -63.3 NC_007605.1 + 63310 0.69 0.4541
Target:  5'- gCCGCCcgGGUcgaGGCAGGU---GGGGGCCu -3'
miRNA:   3'- aGGCGG--UCG---CCGUCCAgguCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 171310 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 170772 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 170250 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 133998 0.75 0.209788
Target:  5'- -gUGCCcggGGCGGCGGGUCgGGaccGGGACCu -3'
miRNA:   3'- agGCGG---UCGCCGUCCAGgUC---CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 2285 0.74 0.230103
Target:  5'- uUCCgGCCagguGGCGGCGGGcuUCCAGaGGGCCc -3'
miRNA:   3'- -AGG-CGG----UCGCCGUCC--AGGUCcCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 58923 0.71 0.36467
Target:  5'- gUCCaGCUcagGGCGGgAGGU-CAGGGGGCg -3'
miRNA:   3'- -AGG-CGG---UCGCCgUCCAgGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 40222 0.7 0.38783
Target:  5'- gUCC-CCA-UGGCacaggccuagGGGUCCAGGGGGCa -3'
miRNA:   3'- -AGGcGGUcGCCG----------UCCAGGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 159256 0.7 0.395762
Target:  5'- cUCGCCGGCGcGCcuGUCCucccaGGGACCc -3'
miRNA:   3'- aGGCGGUCGC-CGucCAGGuc---CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 99166 0.7 0.411937
Target:  5'- gCCGCCGGCucccGCGccGGU-CAGGGGACg -3'
miRNA:   3'- aGGCGGUCGc---CGU--CCAgGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 162067 0.7 0.411937
Target:  5'- gCCGCgucCAGgucUGGCAGGUCgCAGGuGGGCUc -3'
miRNA:   3'- aGGCG---GUC---GCCGUCCAG-GUCC-CCUGG- -5'
33265 5' -63.3 NC_007605.1 + 169712 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.