Results 21 - 40 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 39179 | 0.72 | 0.314444 |
Target: 5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3' miRNA: 3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 39554 | 0.72 | 0.314444 |
Target: 5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3' miRNA: 3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 28268 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 22130 | 0.75 | 0.191038 |
Target: 5'- gUCgGCUGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCGGUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 111142 | 0.68 | 0.480493 |
Target: 5'- aUCUGCUGG-GGCGGGggagCUAcGGGGCCg -3' miRNA: 3'- -AGGCGGUCgCCGUCCa---GGUcCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 38555 | 0.72 | 0.314444 |
Target: 5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3' miRNA: 3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 39804 | 0.72 | 0.314444 |
Target: 5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3' miRNA: 3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 72026 | 0.77 | 0.139937 |
Target: 5'- aCCGCCAGUGGcCGGGgccguggagCCGGGGGcauCCg -3' miRNA: 3'- aGGCGGUCGCC-GUCCa--------GGUCCCCu--GG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 38680 | 0.72 | 0.314444 |
Target: 5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3' miRNA: 3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 40015 | 0.79 | 0.099153 |
Target: 5'- aUCGgCGG-GGCugGGGUCCAGGGGACCa -3' miRNA: 3'- aGGCgGUCgCCG--UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 39679 | 0.72 | 0.314444 |
Target: 5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3' miRNA: 3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 39055 | 0.72 | 0.314444 |
Target: 5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3' miRNA: 3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 12924 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 25199 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 169736 | 0.75 | 0.194209 |
Target: 5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3' miRNA: 3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 171333 | 0.75 | 0.194209 |
Target: 5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3' miRNA: 3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 143002 | 0.68 | 0.489456 |
Target: 5'- cCCGCCGGagcggGGCAGcGgacCCAGcGGACCc -3' miRNA: 3'- aGGCGGUCg----CCGUC-Ca--GGUCcCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 143308 | 0.68 | 0.489456 |
Target: 5'- cCCGCCGGagcggGGCAGcGgacCCAGcGGACCc -3' miRNA: 3'- aGGCGGUCg----CCGUC-Ca--GGUCcCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 49139 | 0.69 | 0.428514 |
Target: 5'- gCCGCaugcaaguGCGGuCGGGUCCcaagcAGGGGAUg -3' miRNA: 3'- aGGCGgu------CGCC-GUCCAGG-----UCCCCUGg -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 97403 | 0.71 | 0.326144 |
Target: 5'- cUCCcUUAGCGGgccagguugugggcCGGGUCCAGGGG-CCa -3' miRNA: 3'- -AGGcGGUCGCC--------------GUCCAGGUCCCCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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