miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33266 5' -58.1 NC_007605.1 + 61862 0.66 0.850257
Target:  5'- cGCCAUgaUGCUGGCCUcugugccccGGgugUCCCgCUCg -3'
miRNA:   3'- uCGGUA--ACGGUCGGA---------CCa--AGGGaGGG- -5'
33266 5' -58.1 NC_007605.1 + 118534 0.66 0.850257
Target:  5'- cAGCCGUUGU--GCCUGucacGUUCCCcgCCg -3'
miRNA:   3'- -UCGGUAACGguCGGAC----CAAGGGa-GGg -5'
33266 5' -58.1 NC_007605.1 + 113177 0.66 0.850257
Target:  5'- aAGCUg--GCCAGgCUGGUgacaaaCUCUCUCa -3'
miRNA:   3'- -UCGGuaaCGGUCgGACCAa-----GGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 70110 0.66 0.850257
Target:  5'- -uCCAcUGCCAccCCUGGguucaUUUCCUCCCg -3'
miRNA:   3'- ucGGUaACGGUc-GGACC-----AAGGGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 26014 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 13739 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 35221 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 19877 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 16808 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 32152 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 29083 0.66 0.850257
Target:  5'- gAGCCccuuUUGCCccCCUGGcggCCCagCCCg -3'
miRNA:   3'- -UCGGu---AACGGucGGACCaa-GGGa-GGG- -5'
33266 5' -58.1 NC_007605.1 + 34700 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 19355 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 94969 0.66 0.842357
Target:  5'- cGGCgAaacuuggGCCAGCCcgGGgggaCCUCCCc -3'
miRNA:   3'- -UCGgUaa-----CGGUCGGa-CCaag-GGAGGG- -5'
33266 5' -58.1 NC_007605.1 + 22424 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 143340 0.66 0.842357
Target:  5'- -aCCAggGuCCGGCCUGGgagcgcaccCCCaUCCCc -3'
miRNA:   3'- ucGGUaaC-GGUCGGACCaa-------GGG-AGGG- -5'
33266 5' -58.1 NC_007605.1 + 31631 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 25493 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5'
33266 5' -58.1 NC_007605.1 + 62166 0.66 0.842357
Target:  5'- cGGCCAUgGCCuugauguccgcGGCCgUGGgcugaCCCUgCCCu -3'
miRNA:   3'- -UCGGUAaCGG-----------UCGG-ACCaa---GGGA-GGG- -5'
33266 5' -58.1 NC_007605.1 + 28562 0.66 0.842357
Target:  5'- cGGCCucugggGCCGcccgggcuGCCgGGgUCCCUCCg -3'
miRNA:   3'- -UCGGuaa---CGGU--------CGGaCCaAGGGAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.