miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33268 5' -58.8 NC_007605.1 + 112749 0.66 0.819516
Target:  5'- aGGUUCUCGGuCAGaCGGccGCGCuGCGAg- -3'
miRNA:   3'- -CCAAGGGUC-GUC-GUC--CGCGuCGCUga -5'
33268 5' -58.8 NC_007605.1 + 40308 0.66 0.819516
Target:  5'- aGGggCCCGGCgggGGUGGGgGguGCG-CUc -3'
miRNA:   3'- -CCaaGGGUCG---UCGUCCgCguCGCuGA- -5'
33268 5' -58.8 NC_007605.1 + 37217 0.66 0.819516
Target:  5'- aGGggCaggggCAGgGGCAGGgGCAGgGGCa -3'
miRNA:   3'- -CCaaGg----GUCgUCGUCCgCGUCgCUGa -5'
33268 5' -58.8 NC_007605.1 + 123107 0.66 0.819516
Target:  5'- cGUUCCCAGUAGguGuugauGCaCAGgGACa -3'
miRNA:   3'- cCAAGGGUCGUCguC-----CGcGUCgCUGa -5'
33268 5' -58.8 NC_007605.1 + 64466 0.66 0.819516
Target:  5'- aGGgcagCCCuGCAGCGGGCcagGCcggagauugagAGUGACa -3'
miRNA:   3'- -CCaa--GGGuCGUCGUCCG---CG-----------UCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 136669 0.66 0.819516
Target:  5'- ---cCCCAggaccGUAGgaAGGCGCGGUGGCUa -3'
miRNA:   3'- ccaaGGGU-----CGUCg-UCCGCGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 49671 0.66 0.819516
Target:  5'- cGG-UCCCAGCGGa---UGCGGCGGCc -3'
miRNA:   3'- -CCaAGGGUCGUCguccGCGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 54939 0.66 0.819516
Target:  5'- ---aCUCAGCcGC-GGCaGCAGCGGCg -3'
miRNA:   3'- ccaaGGGUCGuCGuCCG-CGUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 135303 0.66 0.819516
Target:  5'- gGGgccgUCUguGCAuguguGUGGGCGCAGCuugGACUg -3'
miRNA:   3'- -CCa---AGGguCGU-----CGUCCGCGUCG---CUGA- -5'
33268 5' -58.8 NC_007605.1 + 40608 0.66 0.810134
Target:  5'- gGGUgcacaccUCCCAGcCGGCccGGCGUccuuGCGGCg -3'
miRNA:   3'- -CCA-------AGGGUC-GUCGu-CCGCGu---CGCUGa -5'
33268 5' -58.8 NC_007605.1 + 143423 0.66 0.810134
Target:  5'- gGGUgcacaccUCCCAGcCGGCccGGCGUccuuGCGGCg -3'
miRNA:   3'- -CCA-------AGGGUC-GUCGu-CCGCGu---CGCUGa -5'
33268 5' -58.8 NC_007605.1 + 62772 0.66 0.802317
Target:  5'- --cUCCgGGCGGCcuccuuuuccAGGCGCAGCuucGGCc -3'
miRNA:   3'- ccaAGGgUCGUCG----------UCCGCGUCG---CUGa -5'
33268 5' -58.8 NC_007605.1 + 169642 0.66 0.802317
Target:  5'- ---cCCCAGCA--AGcCGCAGCGACUu -3'
miRNA:   3'- ccaaGGGUCGUcgUCcGCGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 135981 0.66 0.802317
Target:  5'- gGGUUCUCgagggAGgGGCAGGCGC--UGACUc -3'
miRNA:   3'- -CCAAGGG-----UCgUCGUCCGCGucGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 52399 0.66 0.784524
Target:  5'- gGGUggaCCGGCgaugcgguGGCGGGUGaGGCGGCg -3'
miRNA:   3'- -CCAag-GGUCG--------UCGUCCGCgUCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 2704 0.66 0.78362
Target:  5'- cGGcggCCCGGCGccaaCAGGCcuuucagaccaggGCGGCGGCUg -3'
miRNA:   3'- -CCaa-GGGUCGUc---GUCCG-------------CGUCGCUGA- -5'
33268 5' -58.8 NC_007605.1 + 160837 0.67 0.775426
Target:  5'- ---aCCCAGCAGCagcccggccgAGGC-CuGCGACg -3'
miRNA:   3'- ccaaGGGUCGUCG----------UCCGcGuCGCUGa -5'
33268 5' -58.8 NC_007605.1 + 119766 0.67 0.766204
Target:  5'- aGGUUCCggcccugggaCGGCAGCAGcCGCcGgGACg -3'
miRNA:   3'- -CCAAGG----------GUCGUCGUCcGCGuCgCUGa -5'
33268 5' -58.8 NC_007605.1 + 78389 0.67 0.766204
Target:  5'- uGGggCCUGuGCuuGCAGGUGCGGUGAg- -3'
miRNA:   3'- -CCaaGGGU-CGu-CGUCCGCGUCGCUga -5'
33268 5' -58.8 NC_007605.1 + 136180 0.67 0.766204
Target:  5'- --aUCCCAGCcgAGUcguauuuaaAGGC-CAGCGACg -3'
miRNA:   3'- ccaAGGGUCG--UCG---------UCCGcGUCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.