miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 126090 0.65 0.950155
Target:  5'- cGGacCCGGCCcgGAGACUggugGC-CCUCCuGCg -3'
miRNA:   3'- -CC--GGUCGG--UUUUGAa---CGuGGGGGuCG- -5'
33269 3' -55 NC_007605.1 + 56600 0.65 0.950155
Target:  5'- uGGCCAGggAcgGCagGCagGCCUCCAGCu -3'
miRNA:   3'- -CCGGUCggUuuUGaaCG--UGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 56748 0.65 0.950155
Target:  5'- uGCCGguGCUAAGAUgcugGCugaaauUCCCCAGCu -3'
miRNA:   3'- cCGGU--CGGUUUUGaa--CGu-----GGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 150760 0.65 0.950155
Target:  5'- -cCCAGCCGAGGCc-GCGCCagagcagagCCCGGg -3'
miRNA:   3'- ccGGUCGGUUUUGaaCGUGG---------GGGUCg -5'
33269 3' -55 NC_007605.1 + 105845 0.65 0.950155
Target:  5'- aGGaaGGCgUAGAGCc--CGCCCCCGGCc -3'
miRNA:   3'- -CCggUCG-GUUUUGaacGUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 76698 0.65 0.950155
Target:  5'- --aCAGCCGAGA-UUGCugCCCCu-- -3'
miRNA:   3'- ccgGUCGGUUUUgAACGugGGGGucg -5'
33269 3' -55 NC_007605.1 + 90628 0.65 0.950155
Target:  5'- cGGCCacagcacacaaGGCaaaGGAGCUUGCGauggccCUCCCAGg -3'
miRNA:   3'- -CCGG-----------UCGg--UUUUGAACGU------GGGGGUCg -5'
33269 3' -55 NC_007605.1 + 55062 0.65 0.950155
Target:  5'- cGGCCuccaggcGCC-AGGCcUGCACCUCCuucugucugAGCu -3'
miRNA:   3'- -CCGGu------CGGuUUUGaACGUGGGGG---------UCG- -5'
33269 3' -55 NC_007605.1 + 71947 0.65 0.950155
Target:  5'- gGGCUAGCUggGAUguagUGCugucuugacuGgCCUCAGCc -3'
miRNA:   3'- -CCGGUCGGuuUUGa---ACG----------UgGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 5203 0.65 0.950155
Target:  5'- cGGCCuGCCAGGGCagag-UCCCUGGCc -3'
miRNA:   3'- -CCGGuCGGUUUUGaacguGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 111395 0.65 0.950155
Target:  5'- uGGCgCAG---GGACUcuaagGCACCCCgAGCa -3'
miRNA:   3'- -CCG-GUCgguUUUGAa----CGUGGGGgUCG- -5'
33269 3' -55 NC_007605.1 + 38764 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 53578 0.66 0.945855
Target:  5'- aGGCU-GCCAGGggccuggcGCUUGgGgCCUCGGCu -3'
miRNA:   3'- -CCGGuCGGUUU--------UGAACgUgGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 39513 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 39388 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 38514 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 39638 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 38264 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 38389 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5'
33269 3' -55 NC_007605.1 + 39138 0.66 0.945855
Target:  5'- gGGgCAGCCGGggUUccugGCGCUCCgGGg -3'
miRNA:   3'- -CCgGUCGGUUuuGAa---CGUGGGGgUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.