miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33270 3' -60.1 NC_007605.1 + 125192 0.66 0.780663
Target:  5'- gGCCCUgggcagGGAGGCCAC-CuuuuacGCGUGuCGGg -3'
miRNA:   3'- -CGGGG------CCUCCGGUGcGu-----CGUACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 50827 0.66 0.780663
Target:  5'- cGCCCgUGGuGGCCGC-CGGCGcaGCAGc -3'
miRNA:   3'- -CGGG-GCCuCCGGUGcGUCGUacUGUC- -5'
33270 3' -60.1 NC_007605.1 + 106457 0.66 0.780663
Target:  5'- gGCUCCaGGGaGCCuccaaGCGGCGgcUGGCAGg -3'
miRNA:   3'- -CGGGGcCUC-CGGug---CGUCGU--ACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 2754 0.66 0.780663
Target:  5'- uGgCCUGGAuGGuCCcCGCGGCAUGAa-- -3'
miRNA:   3'- -CgGGGCCU-CC-GGuGCGUCGUACUguc -5'
33270 3' -60.1 NC_007605.1 + 146637 0.66 0.771638
Target:  5'- gGCCCgcugaaauUGGcGGCCAgaugucaGCAGCAUGcCAGg -3'
miRNA:   3'- -CGGG--------GCCuCCGGUg------CGUCGUACuGUC- -5'
33270 3' -60.1 NC_007605.1 + 141910 0.66 0.770729
Target:  5'- aCCCCGGAcccggcugcagccGGCCAccccCGCcggAGCggGGCAGc -3'
miRNA:   3'- cGGGGCCU-------------CCGGU----GCG---UCGuaCUGUC- -5'
33270 3' -60.1 NC_007605.1 + 111679 0.66 0.767995
Target:  5'- aGCCUCGGuagaaaagagagcGGCUgugaGCGCA-CGUGACAGa -3'
miRNA:   3'- -CGGGGCCu------------CCGG----UGCGUcGUACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 81493 0.66 0.762496
Target:  5'- gGCCCUGGGaGCCAUcccugacacagGCuGCggGGCAGg -3'
miRNA:   3'- -CGGGGCCUcCGGUG-----------CGuCGuaCUGUC- -5'
33270 3' -60.1 NC_007605.1 + 103858 0.66 0.753246
Target:  5'- aCgUUGGuGGCCACGCAG-AUGGCGu -3'
miRNA:   3'- cGgGGCCuCCGGUGCGUCgUACUGUc -5'
33270 3' -60.1 NC_007605.1 + 150750 0.66 0.753246
Target:  5'- cGUCCCGugucccagccGAGGCCGCGCcagAGCAgagcccggGACuGa -3'
miRNA:   3'- -CGGGGC----------CUCCGGUGCG---UCGUa-------CUGuC- -5'
33270 3' -60.1 NC_007605.1 + 96852 0.66 0.752316
Target:  5'- cCCCCGGgagcgauagagcaGGGCCcCGCAG-AUGACc- -3'
miRNA:   3'- cGGGGCC-------------UCCGGuGCGUCgUACUGuc -5'
33270 3' -60.1 NC_007605.1 + 10570 0.66 0.743897
Target:  5'- gGCCCgGGcccAGGCCuuGCagGGCA-GACGGu -3'
miRNA:   3'- -CGGGgCC---UCCGGugCG--UCGUaCUGUC- -5'
33270 3' -60.1 NC_007605.1 + 131240 0.66 0.743897
Target:  5'- -aCCaCGGAGGCCGa-CAGCAaaUGGCGa -3'
miRNA:   3'- cgGG-GCCUCCGGUgcGUCGU--ACUGUc -5'
33270 3' -60.1 NC_007605.1 + 49880 0.66 0.743897
Target:  5'- uGUUCCGG-GGCgGCGguGgAUGAgAGg -3'
miRNA:   3'- -CGGGGCCuCCGgUGCguCgUACUgUC- -5'
33270 3' -60.1 NC_007605.1 + 48738 0.66 0.743897
Target:  5'- aGgCCCGGGGaCC-CGCGGCA-GGCAc -3'
miRNA:   3'- -CgGGGCCUCcGGuGCGUCGUaCUGUc -5'
33270 3' -60.1 NC_007605.1 + 50586 0.66 0.738242
Target:  5'- gGCCaCGGGGGCgCugGCGGCcgGcgcccguccucggggGCAGc -3'
miRNA:   3'- -CGGgGCCUCCG-GugCGUCGuaC---------------UGUC- -5'
33270 3' -60.1 NC_007605.1 + 42350 0.66 0.734455
Target:  5'- uGgCCUGGAuGGCCugGUgcauGCAUGccuGCAGg -3'
miRNA:   3'- -CgGGGCCU-CCGGugCGu---CGUAC---UGUC- -5'
33270 3' -60.1 NC_007605.1 + 159732 0.66 0.734455
Target:  5'- gGCCCCGGGaGCCACG--GCGUcaaACAGg -3'
miRNA:   3'- -CGGGGCCUcCGGUGCguCGUAc--UGUC- -5'
33270 3' -60.1 NC_007605.1 + 163018 0.66 0.734455
Target:  5'- aCCCCGGugccGGagaCGgGCAGCuacGUGGCGGg -3'
miRNA:   3'- cGGGGCCu---CCg--GUgCGUCG---UACUGUC- -5'
33270 3' -60.1 NC_007605.1 + 116473 0.66 0.733506
Target:  5'- aGCCCCagcaggcaaacacGGAGGCCAUGCucucaGGUA--ACGGg -3'
miRNA:   3'- -CGGGG-------------CCUCCGGUGCG-----UCGUacUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.