miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33271 3' -58.1 NC_007605.1 + 150716 0.66 0.875715
Target:  5'- cACCcggaGCAcGACGCCGUUgUU-CCACCCa -3'
miRNA:   3'- -UGG----UGU-CUGUGGCAGgAGuGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 128332 0.66 0.875715
Target:  5'- cCCuCAGGCACCauuaugagaaauGUCagauUCGCCACCCc -3'
miRNA:   3'- uGGuGUCUGUGG------------CAGg---AGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 155013 0.66 0.875715
Target:  5'- uCCGCAu-CACCGgCCUCAUC-CCCa -3'
miRNA:   3'- uGGUGUcuGUGGCaGGAGUGGuGGGc -5'
33271 3' -58.1 NC_007605.1 + 49923 0.66 0.875715
Target:  5'- gACCACuAGGuCGCCGgaggucgacccUCCugUCACCACCUc -3'
miRNA:   3'- -UGGUG-UCU-GUGGC-----------AGG--AGUGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 60066 0.66 0.875715
Target:  5'- gGCCcUGGugGaCGUCCUCACCAUCa- -3'
miRNA:   3'- -UGGuGUCugUgGCAGGAGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 39354 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 87439 0.66 0.868598
Target:  5'- aAUCAuCAGugACCGUggagCC-CGCCcACCCGa -3'
miRNA:   3'- -UGGU-GUCugUGGCA----GGaGUGG-UGGGC- -5'
33271 3' -58.1 NC_007605.1 + 90219 0.66 0.868598
Target:  5'- uGCCGCcccuccauGAgcccCACCGUCCgcuGCCGCCCc -3'
miRNA:   3'- -UGGUGu-------CU----GUGGCAGGag-UGGUGGGc -5'
33271 3' -58.1 NC_007605.1 + 39729 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 39604 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 39479 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 159540 0.66 0.868598
Target:  5'- cCCG-GGACGCCuccUCCUCGCCucgGCCCa -3'
miRNA:   3'- uGGUgUCUGUGGc--AGGAGUGG---UGGGc -5'
33271 3' -58.1 NC_007605.1 + 38855 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 38480 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 38605 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 39104 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 38979 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 38730 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 39229 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5'
33271 3' -58.1 NC_007605.1 + 38355 0.66 0.868598
Target:  5'- cCCGCuGGGCACCG-CUgCGCCGCCg- -3'
miRNA:   3'- uGGUG-UCUGUGGCaGGaGUGGUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.