miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33275 3' -52.4 NC_007605.1 + 55215 0.66 0.983132
Target:  5'- -gGGCAuCCuCUGGAGCcuGACCUGugAu -3'
miRNA:   3'- gaCCGUcGG-GAUUUCGu-CUGGAUugU- -5'
33275 3' -52.4 NC_007605.1 + 84359 0.66 0.983132
Target:  5'- -aGGCAGCCagaacAGAGCAGccaagagccacGCCUGAa- -3'
miRNA:   3'- gaCCGUCGGga---UUUCGUC-----------UGGAUUgu -5'
33275 3' -52.4 NC_007605.1 + 150889 0.66 0.983132
Target:  5'- cCUGGuCAGCCgCagagGAAGCAuGACCUugggguggGACGg -3'
miRNA:   3'- -GACC-GUCGG-Ga---UUUCGU-CUGGA--------UUGU- -5'
33275 3' -52.4 NC_007605.1 + 10575 0.66 0.982933
Target:  5'- -gGGCccaGGCCUUGcaGGGCAGACgguuaggCUGACAa -3'
miRNA:   3'- gaCCG---UCGGGAU--UUCGUCUG-------GAUUGU- -5'
33275 3' -52.4 NC_007605.1 + 133685 0.66 0.98106
Target:  5'- -aGGCuGCCCUGAuccucucGguGGCCUAc-- -3'
miRNA:   3'- gaCCGuCGGGAUUu------CguCUGGAUugu -5'
33275 3' -52.4 NC_007605.1 + 24320 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 18182 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 15114 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 61362 0.66 0.98106
Target:  5'- -cGGCGGCCCc---GCGGACa-GACGu -3'
miRNA:   3'- gaCCGUCGGGauuuCGUCUGgaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 55043 0.66 0.98106
Target:  5'- gUGGCGGgCUUAAAGCcuucGGCCUccaGGCGc -3'
miRNA:   3'- gACCGUCgGGAUUUCGu---CUGGA---UUGU- -5'
33275 3' -52.4 NC_007605.1 + 21251 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 33527 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 127517 0.66 0.98106
Target:  5'- aUGGCaggugcacGGCCCcgugaaUGAAGCGGGCCccgGGCu -3'
miRNA:   3'- gACCG--------UCGGG------AUUUCGUCUGGa--UUGu -5'
33275 3' -52.4 NC_007605.1 + 27389 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 30458 0.66 0.98106
Target:  5'- cCUGGCugauGCaaCUUGAGGCAG-CCUAAUc -3'
miRNA:   3'- -GACCGu---CG--GGAUUUCGUCuGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 50743 0.66 0.98106
Target:  5'- -aGGCAcccGCCCUGGGGUccGGCUUGGCc -3'
miRNA:   3'- gaCCGU---CGGGAUUUCGu-CUGGAUUGu -5'
33275 3' -52.4 NC_007605.1 + 61028 0.66 0.98106
Target:  5'- -gGGCAGCUCguUGGAGaGGACCcGGCGa -3'
miRNA:   3'- gaCCGUCGGG--AUUUCgUCUGGaUUGU- -5'
33275 3' -52.4 NC_007605.1 + 150624 0.66 0.979038
Target:  5'- -gGGCGGCCCgggcuccagcagaacGucGCAGACCcAGCc -3'
miRNA:   3'- gaCCGUCGGGa--------------UuuCGUCUGGaUUGu -5'
33275 3' -52.4 NC_007605.1 + 85456 0.66 0.978804
Target:  5'- gCUGGCAGCCUUcaccAGGGUccGGcACCagUGACAa -3'
miRNA:   3'- -GACCGUCGGGA----UUUCG--UC-UGG--AUUGU- -5'
33275 3' -52.4 NC_007605.1 + 81496 0.66 0.978804
Target:  5'- cCUGGgAGCcaucCCUGAcacaggcugcggGGCAGGCCUuuGCAc -3'
miRNA:   3'- -GACCgUCG----GGAUU------------UCGUCUGGAu-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.