miRNA display CGI


Results 21 - 40 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 166156 0.77 0.15657
Target:  5'- --cGGGGCUAGgGGGacCCGCGCCCAUUg -3'
miRNA:   3'- ccaCCCCGGUCgCCU--GGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 164054 0.66 0.647355
Target:  5'- gGGUaGGuGGCCAGgGGguaaaaguagauguaGCCGCACggACCc -3'
miRNA:   3'- -CCA-CC-CCGGUCgCC---------------UGGCGUGggUGG- -5'
33276 3' -63.1 NC_007605.1 + 163505 0.67 0.592691
Target:  5'- uGUGGacagcgcggcaugcGaGCUGGCGGugagcuaCGCACCCGCCa -3'
miRNA:   3'- cCACC--------------C-CGGUCGCCug-----GCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 163206 0.67 0.595558
Target:  5'- aGGaGGGGaCCuG-GGACCcCugCCGCCg -3'
miRNA:   3'- -CCaCCCC-GGuCgCCUGGcGugGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 162795 0.72 0.304439
Target:  5'- -aUGGGaCUGGCGG-CCGCcCCCGCCa -3'
miRNA:   3'- ccACCCcGGUCGCCuGGCGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 162313 0.67 0.557575
Target:  5'- -aUGGGGCaGGCGGGCUGCGCaaagggguugCACg -3'
miRNA:   3'- ccACCCCGgUCGCCUGGCGUGg---------GUGg -5'
33276 3' -63.1 NC_007605.1 + 161949 0.66 0.672247
Target:  5'- --cGGGGCCAGCGcGGaggaGUACUCugACCu -3'
miRNA:   3'- ccaCCCCGGUCGC-CUgg--CGUGGG--UGG- -5'
33276 3' -63.1 NC_007605.1 + 161779 0.67 0.586013
Target:  5'- -cUGGGGaCAG-GGACCGaGCgCCGCCu -3'
miRNA:   3'- ccACCCCgGUCgCCUGGCgUG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 160603 0.67 0.576497
Target:  5'- aGGaUGGccuccagcucGGCCAGCaGGCCggcguuGCGCaCCACCg -3'
miRNA:   3'- -CC-ACC----------CCGGUCGcCUGG------CGUG-GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 160008 0.71 0.375829
Target:  5'- ---cGGGCCcG-GGACCGCGCCCuCCu -3'
miRNA:   3'- ccacCCCGGuCgCCUGGCGUGGGuGG- -5'
33276 3' -63.1 NC_007605.1 + 159856 0.78 0.135489
Target:  5'- cGGUGgaGGGCUgaaGGCGGACUGCGCCgcCGCCu -3'
miRNA:   3'- -CCAC--CCCGG---UCGCCUGGCGUGG--GUGG- -5'
33276 3' -63.1 NC_007605.1 + 159482 0.68 0.520315
Target:  5'- --aGGGcGCCGGaCGGGCCGgGCUCucguGCCc -3'
miRNA:   3'- ccaCCC-CGGUC-GCCUGGCgUGGG----UGG- -5'
33276 3' -63.1 NC_007605.1 + 159320 0.66 0.652151
Target:  5'- --cGGGGCCccuggcggaggagAGCGGGCUcuuuCcCCCACCc -3'
miRNA:   3'- ccaCCCCGG-------------UCGCCUGGc---GuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 158823 0.68 0.537904
Target:  5'- gGGgcaGGGCCuggccggGGCuGACCGCGUCCGCCc -3'
miRNA:   3'- -CCac-CCCGG-------UCGcCUGGCGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 157376 0.68 0.529545
Target:  5'- cGUGGGGggcaCCGGUGuGGuggcguuccCCGCAuCCCGCCu -3'
miRNA:   3'- cCACCCC----GGUCGC-CU---------GGCGU-GGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 155981 0.67 0.614713
Target:  5'- aGGgGGGGCUgaGGCcc-CCGCACauCCACCa -3'
miRNA:   3'- -CCaCCCCGG--UCGccuGGCGUG--GGUGG- -5'
33276 3' -63.1 NC_007605.1 + 155262 0.71 0.356222
Target:  5'- uGGUagGaGGGCCAGgagcugucuucacgcCGGACCGagagguCGCCCACCu -3'
miRNA:   3'- -CCA--C-CCCGGUC---------------GCCUGGC------GUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 153542 0.67 0.608959
Target:  5'- uGGaaGGGCCGGUGGgagaggaggcugGCCGCcuccuuuacccgggcAUCCGCCa -3'
miRNA:   3'- -CCacCCCGGUCGCC------------UGGCG---------------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 152469 0.68 0.54818
Target:  5'- --gGGGGCCauGGUGGAgaGCAUCUugCu -3'
miRNA:   3'- ccaCCCCGG--UCGCCUggCGUGGGugG- -5'
33276 3' -63.1 NC_007605.1 + 151564 0.71 0.368202
Target:  5'- aGGUacGGGCUGGUGGGCUcccucugggagGUGCCCGCCg -3'
miRNA:   3'- -CCAc-CCCGGUCGCCUGG-----------CGUGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.