miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 5' -63.8 NC_007605.1 + 152089 0.68 0.487659
Target:  5'- cCGGcugcuaccuacuGGCGGcAGUCCuGAUCgUCCUCCUCa -3'
miRNA:   3'- -GCC------------CCGCC-UCGGG-UUAGgAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 151255 0.71 0.306276
Target:  5'- uGGGGCcgccuGAGCCC-AUCCUCgCCCa- -3'
miRNA:   3'- gCCCCGc----CUCGGGuUAGGAGgGGGag -5'
33277 5' -63.8 NC_007605.1 + 150209 0.69 0.435222
Target:  5'- gGGGGCGGgcgacggugcGGcCCCAAUacaaCUCUCCgCUCg -3'
miRNA:   3'- gCCCCGCC----------UC-GGGUUAg---GAGGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 144309 0.68 0.449755
Target:  5'- uGGGGCGGcAGCCUcuaacuuuGGcuguggccucuauuUCCUCCCUUUCc -3'
miRNA:   3'- gCCCCGCC-UCGGG--------UU--------------AGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 143812 0.72 0.262365
Target:  5'- aGGGGCGGAGCUUAGgauaCCUCCaggauaauggaaCCCUa -3'
miRNA:   3'- gCCCCGCCUCGGGUUa---GGAGG------------GGGAg -5'
33277 5' -63.8 NC_007605.1 + 143735 1.07 0.000945
Target:  5'- uCGGGGCGGAGCCCGAUCCUCCCCCUCc -3'
miRNA:   3'- -GCCCCGCCUCGGGUUAGGAGGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 143492 0.67 0.552307
Target:  5'- gGGuaGGCGGAGCCuCAGgagggUCCCCUCc -3'
miRNA:   3'- gCC--CCGCCUCGG-GUUagga-GGGGGAG- -5'
33277 5' -63.8 NC_007605.1 + 143082 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142980 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142878 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142776 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142675 0.73 0.250229
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcUCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGG--AGGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142573 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142471 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142369 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142267 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142165 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 142063 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141961 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5'
33277 5' -63.8 NC_007605.1 + 141859 0.73 0.255949
Target:  5'- gGGGGCGGccggguGGCCCAccggguccgcuggGUCCgcugCCCCgCUCc -3'
miRNA:   3'- gCCCCGCC------UCGGGU-------------UAGGa---GGGG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.