miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 3' -57.5 NC_007605.1 + 107404 0.66 0.885718
Target:  5'- gCUCAGcGUGUUC-CuGGCCCUGGgcaACa -3'
miRNA:   3'- gGAGUC-CACAGGuGuCCGGGGUCa--UG- -5'
33280 3' -57.5 NC_007605.1 + 121327 0.66 0.878829
Target:  5'- gCC-CAGGgaUUCACAGuGCUCCGGUAUu -3'
miRNA:   3'- -GGaGUCCacAGGUGUC-CGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 171194 0.66 0.878829
Target:  5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3'
miRNA:   3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5'
33280 3' -57.5 NC_007605.1 + 171732 0.66 0.878829
Target:  5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3'
miRNA:   3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5'
33280 3' -57.5 NC_007605.1 + 170672 0.66 0.878829
Target:  5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3'
miRNA:   3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5'
33280 3' -57.5 NC_007605.1 + 170134 0.66 0.878829
Target:  5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3'
miRNA:   3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5'
33280 3' -57.5 NC_007605.1 + 40087 0.66 0.871729
Target:  5'- aCCUgggUGGGUgcgGUCCGCuGGCCCCAc--- -3'
miRNA:   3'- -GGA---GUCCA---CAGGUGuCCGGGGUcaug -5'
33280 3' -57.5 NC_007605.1 + 138497 0.66 0.85691
Target:  5'- uCCUCAGGUGgCUuUAGGCCUaauGUAg -3'
miRNA:   3'- -GGAGUCCACaGGuGUCCGGGgu-CAUg -5'
33280 3' -57.5 NC_007605.1 + 56488 0.67 0.841305
Target:  5'- -gUCAGGcGUCUGCGGGCCgccuCCAGg-- -3'
miRNA:   3'- ggAGUCCaCAGGUGUCCGG----GGUCaug -5'
33280 3' -57.5 NC_007605.1 + 127521 0.67 0.841305
Target:  5'- cCCgauggCAGGUGcacggCCccgugaaugaaGCGGGCCCCGGgcUGCu -3'
miRNA:   3'- -GGa----GUCCACa----GG-----------UGUCCGGGGUC--AUG- -5'
33280 3' -57.5 NC_007605.1 + 163392 0.67 0.833224
Target:  5'- -gUgAGG-GUCCAgAGGCCCguGUGg -3'
miRNA:   3'- ggAgUCCaCAGGUgUCCGGGguCAUg -5'
33280 3' -57.5 NC_007605.1 + 10008 0.67 0.833224
Target:  5'- gCCUgcgCAGGUG-CCACAGGUUCCugccGUGu -3'
miRNA:   3'- -GGA---GUCCACaGGUGUCCGGGGu---CAUg -5'
33280 3' -57.5 NC_007605.1 + 98340 0.67 0.805341
Target:  5'- uCCUCuGGGUagacgguggccugaGUCCGCAGGCgUCGG-ACa -3'
miRNA:   3'- -GGAG-UCCA--------------CAGGUGUCCGgGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 61491 0.68 0.80272
Target:  5'- uCCUCAGGUcucugcuauggGUCCgcuacagccgccuguGgCAGGCCCCGGccccgGCu -3'
miRNA:   3'- -GGAGUCCA-----------CAGG---------------U-GUCCGGGGUCa----UG- -5'
33280 3' -57.5 NC_007605.1 + 56389 0.68 0.799205
Target:  5'- aCCaaGGGgacGUCCACgugcGGGCCCCuGUAg -3'
miRNA:   3'- -GGagUCCa--CAGGUG----UCCGGGGuCAUg -5'
33280 3' -57.5 NC_007605.1 + 153895 0.69 0.743972
Target:  5'- cCCUCGGG-GUUgAgGGGCgCCCAG-GCg -3'
miRNA:   3'- -GGAGUCCaCAGgUgUCCG-GGGUCaUG- -5'
33280 3' -57.5 NC_007605.1 + 100409 0.69 0.724711
Target:  5'- gCCUCgAGcGUGUCCAUaaaguccccgaAGGUgCCGGUAUa -3'
miRNA:   3'- -GGAG-UC-CACAGGUG-----------UCCGgGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 121566 0.69 0.705142
Target:  5'- aCCUgcCAGGUauGUCCugGGGUCCCGaaGCa -3'
miRNA:   3'- -GGA--GUCCA--CAGGugUCCGGGGUcaUG- -5'
33280 3' -57.5 NC_007605.1 + 98536 0.7 0.685334
Target:  5'- aUCUgGGGgagaaaacUCCgGCAGGCUCCGGUGCa -3'
miRNA:   3'- -GGAgUCCac------AGG-UGUCCGGGGUCAUG- -5'
33280 3' -57.5 NC_007605.1 + 85175 0.7 0.662349
Target:  5'- aCCUgAGGUG-CCACccguuccccggcagAGGCCUCGGgggGCg -3'
miRNA:   3'- -GGAgUCCACaGGUG--------------UCCGGGGUCa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.