miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 77621 0.66 0.999981
Target:  5'- cGGGGu----GCUGGCGAACug-GuGGa -3'
miRNA:   3'- -CCCUuuauuCGACCGUUUGugaCuCC- -5'
33280 5' -46.6 NC_007605.1 + 48424 0.66 0.999981
Target:  5'- gGGGGAGaAAGacgGGCGGGgGCguagggGAGGa -3'
miRNA:   3'- -CCCUUUaUUCga-CCGUUUgUGa-----CUCC- -5'
33280 5' -46.6 NC_007605.1 + 55705 0.66 0.999981
Target:  5'- gGGGuuGUcguGGUUGGCGGguguCGCaGAGGg -3'
miRNA:   3'- -CCCuuUAu--UCGACCGUUu---GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 2006 0.66 0.999981
Target:  5'- aGGAAAcggcGAGCagGGUGAACACUuGGGc -3'
miRNA:   3'- cCCUUUa---UUCGa-CCGUUUGUGAcUCC- -5'
33280 5' -46.6 NC_007605.1 + 62500 0.66 0.999981
Target:  5'- cGGAGA--GGCugucgUGGgGGGCAgUGAGGa -3'
miRNA:   3'- cCCUUUauUCG-----ACCgUUUGUgACUCC- -5'
33280 5' -46.6 NC_007605.1 + 169085 0.66 0.999981
Target:  5'- cGGGuccccGGggGGCAAGCugUGGGa -3'
miRNA:   3'- -CCCuuuauUCgaCCGUUUGugACUCc -5'
33280 5' -46.6 NC_007605.1 + 164220 0.66 0.999981
Target:  5'- aGGGAGG-----UGGCc-ACACUGGGGa -3'
miRNA:   3'- -CCCUUUauucgACCGuuUGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 147114 0.66 0.999981
Target:  5'- aGGGAcuuuGGUUGGCAAGCAgacAGGc -3'
miRNA:   3'- -CCCUuuauUCGACCGUUUGUgacUCC- -5'
33280 5' -46.6 NC_007605.1 + 153100 0.66 0.99998
Target:  5'- cGGGG----GGCUGGCGAAgAUUcccaaccGGGGg -3'
miRNA:   3'- -CCCUuuauUCGACCGUUUgUGA-------CUCC- -5'
33280 5' -46.6 NC_007605.1 + 144211 0.66 0.99998
Target:  5'- gGGGAGugguuuuguGUGAGCcggaaguUGGCAAugGggUGAGGg -3'
miRNA:   3'- -CCCUU---------UAUUCG-------ACCGUUugUg-ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 127127 0.66 0.999974
Target:  5'- cGGuuGAUAcAGCUGGgaucCAGGCGCagGAGGg -3'
miRNA:   3'- -CCcuUUAU-UCGACC----GUUUGUGa-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 116478 0.66 0.999974
Target:  5'- -------cAGCaGGCAAACACgGAGGc -3'
miRNA:   3'- cccuuuauUCGaCCGUUUGUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 150927 0.66 0.999974
Target:  5'- cGGGAcGUGgucGGCUGGCAccaGGC-CUGGc- -3'
miRNA:   3'- -CCCUuUAU---UCGACCGU---UUGuGACUcc -5'
33280 5' -46.6 NC_007605.1 + 87730 0.66 0.999974
Target:  5'- cGGGAAggcgguggcGUAGGCUugacuggaaccGGUuuGGGCACUGgAGGu -3'
miRNA:   3'- -CCCUU---------UAUUCGA-----------CCG--UUUGUGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 74733 0.66 0.999974
Target:  5'- -aGAAAUGAGCagacgaugGGCu--CACUGAGa -3'
miRNA:   3'- ccCUUUAUUCGa-------CCGuuuGUGACUCc -5'
33280 5' -46.6 NC_007605.1 + 40249 0.66 0.999973
Target:  5'- cGGAugcagcauccccgGAUGAGCUccaggaccaGGCAAGCGgggcacgccCUGGGGg -3'
miRNA:   3'- cCCU-------------UUAUUCGA---------CCGUUUGU---------GACUCC- -5'
33280 5' -46.6 NC_007605.1 + 62317 0.66 0.999965
Target:  5'- uGGGGGcgGGGCcGGCGGGgGa-GAGGg -3'
miRNA:   3'- -CCCUUuaUUCGaCCGUUUgUgaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 95849 0.66 0.999965
Target:  5'- cGGGAGGggcagGAGCaggaggGGCAGGaGCagGAGGa -3'
miRNA:   3'- -CCCUUUa----UUCGa-----CCGUUUgUGa-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 22399 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 25468 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.