miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33284 5' -54.2 NC_007605.1 + 141689 0.66 0.966752
Target:  5'- gUCCGCugCcccgcuccgGCGGggGgUGC-CGGCUg -3'
miRNA:   3'- -AGGCGugG---------UGUCuuUgAUGuGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 2438 0.66 0.966752
Target:  5'- gUCCGCGCUGC-GAGACacuUACucgGGCCa -3'
miRNA:   3'- -AGGCGUGGUGuCUUUG---AUGug-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 115962 0.66 0.966752
Target:  5'- gUuuGCugCuCGGGGcauGCUGCccgGCGGCCUa -3'
miRNA:   3'- -AggCGugGuGUCUU---UGAUG---UGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 55995 0.66 0.966752
Target:  5'- cUCCGCACCAUccuGGAcGACaucgaggcaaUGUugGGCCUg -3'
miRNA:   3'- -AGGCGUGGUG---UCU-UUG----------AUGugCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 9170 0.66 0.963471
Target:  5'- gUCCGCuuauCGGuAGCUACACaGGCCc -3'
miRNA:   3'- -AGGCGugguGUCuUUGAUGUG-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 116687 0.66 0.963471
Target:  5'- cCCGuUACCugAGA----GCAUGGCCUc -3'
miRNA:   3'- aGGC-GUGGugUCUuugaUGUGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 157634 0.66 0.963471
Target:  5'- aUCCGCGgcCCGCGGGAGCaccccCGCcGCCg -3'
miRNA:   3'- -AGGCGU--GGUGUCUUUGau---GUGcCGGa -5'
33284 5' -54.2 NC_007605.1 + 166107 0.66 0.963471
Target:  5'- --aGCugCAgCAGcGACUGCAaaacCGGCCUg -3'
miRNA:   3'- aggCGugGU-GUCuUUGAUGU----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 71795 0.66 0.963471
Target:  5'- cCCaCGCCAUAc---CUGCACGGCCc -3'
miRNA:   3'- aGGcGUGGUGUcuuuGAUGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 38902 0.66 0.963471
Target:  5'- uUCCugGCGCUcCGGggGCaGCggGCGGCCg -3'
miRNA:   3'- -AGG--CGUGGuGUCuuUGaUG--UGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 111450 0.66 0.963471
Target:  5'- cUCCGUGa-GCAGGAGCUugA-GGCCa -3'
miRNA:   3'- -AGGCGUggUGUCUUUGAugUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 100631 0.66 0.961397
Target:  5'- gCCGUgagGCC-CGGAAGCccgaccagggucuugUACugGGCCa -3'
miRNA:   3'- aGGCG---UGGuGUCUUUG---------------AUGugCCGGa -5'
33284 5' -54.2 NC_007605.1 + 59240 0.66 0.959969
Target:  5'- cUCCGCAUCcUAG-----GCACGGCCUc -3'
miRNA:   3'- -AGGCGUGGuGUCuuugaUGUGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 160539 0.66 0.959969
Target:  5'- -gUGCACCAgcucCAGGGACagggcgcugcaUGCACGGUCa -3'
miRNA:   3'- agGCGUGGU----GUCUUUG-----------AUGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 114562 0.66 0.959969
Target:  5'- cUCUaCGCCcCAGAugaaaguCUAUACGGCCa -3'
miRNA:   3'- -AGGcGUGGuGUCUuu-----GAUGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 76475 0.66 0.959969
Target:  5'- gCCGcCGCCGCGuuuguGGGACUggaaGCGCcGGCCg -3'
miRNA:   3'- aGGC-GUGGUGU-----CUUUGA----UGUG-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 169585 0.66 0.956244
Target:  5'- gUCCGCggGCUcCGGggGCUGCggGCGGUg- -3'
miRNA:   3'- -AGGCG--UGGuGUCuuUGAUG--UGCCGga -5'
33284 5' -54.2 NC_007605.1 + 66885 0.66 0.956244
Target:  5'- -aCGCcuaCGCAGAGGCcauCAUGGCCg -3'
miRNA:   3'- agGCGug-GUGUCUUUGau-GUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 171182 0.66 0.956244
Target:  5'- gUCCGCggGCUcCGGggGCUGCggGCGGUg- -3'
miRNA:   3'- -AGGCG--UGGuGUCuuUGAUG--UGCCGga -5'
33284 5' -54.2 NC_007605.1 + 170122 0.66 0.956244
Target:  5'- gUCCGCggGCUcCGGggGCUGCggGCGGUg- -3'
miRNA:   3'- -AGGCG--UGGuGUCuuUGAUG--UGCCGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.