miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 3' -63.1 NC_007605.1 + 143174 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142869 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 141951 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142563 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142665 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 143276 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142257 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142970 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 61178 0.66 0.609992
Target:  5'- --cCGCGGGGCCgCC-GCCaCCgcuGCCg -3'
miRNA:   3'- uaaGCGUCCCGG-GGaCGGaGGac-CGG- -5'
33286 3' -63.1 NC_007605.1 + 73308 0.66 0.609992
Target:  5'- gAUUC-CAcuGGCCCCgGCagguggCCUGGCCg -3'
miRNA:   3'- -UAAGcGUc-CCGGGGaCGga----GGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 141748 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 143072 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142155 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 147923 0.66 0.609992
Target:  5'- --cCGU-GGGCCUUacCUUCCUGGCCa -3'
miRNA:   3'- uaaGCGuCCCGGGGacGGAGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 141850 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 120492 0.66 0.609992
Target:  5'- --gUGcCAGGGCCCCUugg-CUUGGCCc -3'
miRNA:   3'- uaaGC-GUCCCGGGGAcggaGGACCGG- -5'
33286 3' -63.1 NC_007605.1 + 142359 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142053 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 142767 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5'
33286 3' -63.1 NC_007605.1 + 141646 0.66 0.609992
Target:  5'- --cCGguGGGCCaCCcgGCCgccccccgagcUCCagGGCCg -3'
miRNA:   3'- uaaGCguCCCGG-GGa-CGG-----------AGGa-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.