miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33286 5' -50.4 NC_007605.1 + 151319 0.66 0.99593
Target:  5'- cGGAgCUGGGGCACGGGcc-GCCg--- -3'
miRNA:   3'- aCCU-GAUUCCGUGUUCuuaCGGagug -5'
33286 5' -50.4 NC_007605.1 + 100666 0.66 0.99593
Target:  5'- cUGGGCcAGGGgAuCGAGGAaGaCCUCGCa -3'
miRNA:   3'- -ACCUGaUUCCgU-GUUCUUaC-GGAGUG- -5'
33286 5' -50.4 NC_007605.1 + 13828 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 19966 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 16897 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 26104 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 29172 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 23035 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 35310 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 32241 0.66 0.99593
Target:  5'- gGGACUGGGGUggacacagggggGCGGGGAUGgCC-CGg -3'
miRNA:   3'- aCCUGAUUCCG------------UGUUCUUAC-GGaGUg -5'
33286 5' -50.4 NC_007605.1 + 115366 0.66 0.99593
Target:  5'- cGGGucgGGGGCACucucGAGggUGCCUg-- -3'
miRNA:   3'- aCCUga-UUCCGUG----UUCuuACGGAgug -5'
33286 5' -50.4 NC_007605.1 + 41311 0.66 0.995864
Target:  5'- gGuGACaagucagUAAGGCACGcGGggUGCCacgUCACc -3'
miRNA:   3'- aC-CUG-------AUUCCGUGU-UCuuACGG---AGUG- -5'
33286 5' -50.4 NC_007605.1 + 144127 0.66 0.995864
Target:  5'- gGuGACaagucagUAAGGCACGcGGggUGCCacgUCACc -3'
miRNA:   3'- aC-CUG-------AUUCCGUGU-UCuuACGG---AGUG- -5'
33286 5' -50.4 NC_007605.1 + 170271 0.66 0.995232
Target:  5'- gGGGC---GGCGCGGGA--GCCUgCACg -3'
miRNA:   3'- aCCUGauuCCGUGUUCUuaCGGA-GUG- -5'
33286 5' -50.4 NC_007605.1 + 170793 0.66 0.995232
Target:  5'- gGGGC---GGCGCGGGA--GCCUgCACg -3'
miRNA:   3'- aCCUGauuCCGUGUUCUuaCGGA-GUG- -5'
33286 5' -50.4 NC_007605.1 + 9859 0.66 0.995232
Target:  5'- aGGACUuuaAGGGCuACcuuGGAUGCCagGCc -3'
miRNA:   3'- aCCUGA---UUCCG-UGuu-CUUACGGagUG- -5'
33286 5' -50.4 NC_007605.1 + 169733 0.66 0.995232
Target:  5'- gGGGC---GGCGCGGGA--GCCUgCACg -3'
miRNA:   3'- aCCUGauuCCGUGUUCUuaCGGA-GUG- -5'
33286 5' -50.4 NC_007605.1 + 171331 0.66 0.995232
Target:  5'- gGGGC---GGCGCGGGA--GCCUgCACg -3'
miRNA:   3'- aCCUGauuCCGUGUUCUuaCGGA-GUG- -5'
33286 5' -50.4 NC_007605.1 + 136232 0.66 0.99444
Target:  5'- cGGAC-AAGGCACuucAGAGcccaccaccgGCCUcCACa -3'
miRNA:   3'- aCCUGaUUCCGUGu--UCUUa---------CGGA-GUG- -5'
33286 5' -50.4 NC_007605.1 + 52198 0.66 0.99444
Target:  5'- cGGGCccuccagcGGGCGCAAuGAGUGCCagaGCu -3'
miRNA:   3'- aCCUGau------UCCGUGUU-CUUACGGag-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.