miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33287 5' -54.2 NC_007605.1 + 171327 0.74 0.618989
Target:  5'- gCGGggGgcGGCGcgggAGCCUGCaCGCCGu -3'
miRNA:   3'- -GCCuuCuuCCGUa---UCGGAUGgGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 171293 0.67 0.935019
Target:  5'- gCGGggGAAGGCcacGCC--CCCuCCAc -3'
miRNA:   3'- -GCCuuCUUCCGuauCGGauGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 171096 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 170789 0.74 0.618989
Target:  5'- gCGGggGgcGGCGcgggAGCCUGCaCGCCGu -3'
miRNA:   3'- -GCCuuCuuCCGUa---UCGGAUGgGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 170756 0.67 0.935019
Target:  5'- gCGGggGAAGGCcacGCC--CCCuCCAc -3'
miRNA:   3'- -GCCuuCUUCCGuauCGGauGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 170559 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 170267 0.74 0.618989
Target:  5'- gCGGggGgcGGCGcgggAGCCUGCaCGCCGu -3'
miRNA:   3'- -GCCuuCuuCCGUa---UCGGAUGgGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 170233 0.67 0.935019
Target:  5'- gCGGggGAAGGCcacGCC--CCCuCCAc -3'
miRNA:   3'- -GCCuuCUUCCGuauCGGauGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 170036 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 169729 0.74 0.618989
Target:  5'- gCGGggGgcGGCGcgggAGCCUGCaCGCCGu -3'
miRNA:   3'- -GCCuuCuuCCGUa---UCGGAUGgGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 169696 0.67 0.935019
Target:  5'- gCGGggGAAGGCcacGCC--CCCuCCAc -3'
miRNA:   3'- -GCCuuCUUCCGuauCGGauGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 169499 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 167844 0.66 0.957008
Target:  5'- aCGGAGGcggcGGCAUAGUCaugauuCCgGCCAu -3'
miRNA:   3'- -GCCUUCuu--CCGUAUCGGau----GGgUGGU- -5'
33287 5' -54.2 NC_007605.1 + 164246 0.68 0.906969
Target:  5'- aGGAAGucagucAGGC-UGGCCaggGCCCACg- -3'
miRNA:   3'- gCCUUCu-----UCCGuAUCGGa--UGGGUGgu -5'
33287 5' -54.2 NC_007605.1 + 163749 0.68 0.913066
Target:  5'- aGGAgguguucccAGAGGGCGU-GCCccaGCuCCGCCAg -3'
miRNA:   3'- gCCU---------UCUUCCGUAuCGGa--UG-GGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 161008 0.67 0.926708
Target:  5'- uGGAGGAGGGCAgggcuccgggGGCagacgcaagcgccguCUGgCCACCGu -3'
miRNA:   3'- gCCUUCUUCCGUa---------UCG---------------GAUgGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 160596 0.72 0.701381
Target:  5'- gGGAAGGAGG-AUGGCCUccaGCUCgGCCAg -3'
miRNA:   3'- gCCUUCUUCCgUAUCGGA---UGGG-UGGU- -5'
33287 5' -54.2 NC_007605.1 + 160230 0.68 0.894055
Target:  5'- uGaGGAGAAGGCGaGGCCgggcgGCCCAg-- -3'
miRNA:   3'- gC-CUUCUUCCGUaUCGGa----UGGGUggu -5'
33287 5' -54.2 NC_007605.1 + 160042 0.73 0.680959
Target:  5'- aGGggGAGGGUGgcGGCCauuCCCGCCu -3'
miRNA:   3'- gCCuuCUUCCGUa-UCGGau-GGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 159961 0.66 0.964169
Target:  5'- aGGAGGcgcuggcgGGGGCAaGGCUgACUCACCu -3'
miRNA:   3'- gCCUUC--------UUCCGUaUCGGaUGGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.