miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 140667 0.66 0.986682
Target:  5'- uGGGUccgCUGCCCCGcuccggcgggggguGGCCGgcugcagccgggucCGGGUUCCg -3'
miRNA:   3'- cCCCG---GACGGGGU--------------UUGGU--------------GUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 51947 0.66 0.986022
Target:  5'- aGGGGCCgaccgaggaagGCCgCC--GCCACGGccgCCu -3'
miRNA:   3'- -CCCCGGa----------CGG-GGuuUGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 47515 0.66 0.986022
Target:  5'- cGGcGCC-GCCUCGgauuccGACCACGAGUcuuugucccUCCa -3'
miRNA:   3'- cCC-CGGaCGGGGU------UUGGUGUUUA---------AGG- -5'
33288 3' -52.8 NC_007605.1 + 45276 0.66 0.986022
Target:  5'- uGGuGGCCUgGCCCCccga-GCAGG-UCCg -3'
miRNA:   3'- -CC-CCGGA-CGGGGuuuggUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 157439 0.66 0.986022
Target:  5'- gGGGGUgCU-CCCgCGGGCCGCGGAUggggCUg -3'
miRNA:   3'- -CCCCG-GAcGGG-GUUUGGUGUUUAa---GG- -5'
33288 3' -52.8 NC_007605.1 + 127327 0.66 0.986022
Target:  5'- cGGGGCCgUGCaCCU--GCCAuCGGGacagauugucUUCCa -3'
miRNA:   3'- -CCCCGG-ACG-GGGuuUGGU-GUUU----------AAGG- -5'
33288 3' -52.8 NC_007605.1 + 121247 0.66 0.986022
Target:  5'- aGGGGCUguagagGCCCgGGACgGCcg--UCUg -3'
miRNA:   3'- -CCCCGGa-----CGGGgUUUGgUGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 15564 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 33977 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 129011 0.66 0.984262
Target:  5'- uGGGGa--GCCCC--GCCA--GAUUCCa -3'
miRNA:   3'- -CCCCggaCGGGGuuUGGUguUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 168801 0.66 0.984262
Target:  5'- gGGGGCCgucgcggGCCCgGugGGCCccucuCAAggucguGUUCCa -3'
miRNA:   3'- -CCCCGGa------CGGGgU--UUGGu----GUU------UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 24771 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 21702 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 12495 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 30909 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 18633 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 27840 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 10640 0.66 0.984077
Target:  5'- aGGGGCacaagaaUGCCggcgaaaCUGGACCACGG--UCCa -3'
miRNA:   3'- -CCCCGg------ACGG-------GGUUUGGUGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 4085 0.66 0.982339
Target:  5'- -cGGCCuccUGCCCCgAGACCgGCucg-UCCg -3'
miRNA:   3'- ccCCGG---ACGGGG-UUUGG-UGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 94892 0.66 0.982339
Target:  5'- -cGGCCcugccuccgGCCCCAucCCGCGAGccCCa -3'
miRNA:   3'- ccCCGGa--------CGGGGUuuGGUGUUUaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.