miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 3' -58.9 NC_007605.1 + 125574 0.66 0.816538
Target:  5'- gGAGGUGGgcagcgugGuCAGGGuGGGCagagGACCa- -3'
miRNA:   3'- -CUCCACCa-------CuGUCCU-CCCGa---CUGGag -5'
33292 3' -58.9 NC_007605.1 + 37243 0.66 0.815686
Target:  5'- -uGGUGGUGGCaauugugAGGGGGGUaaUGGCa-- -3'
miRNA:   3'- cuCCACCACUG-------UCCUCCCG--ACUGgag -5'
33292 3' -58.9 NC_007605.1 + 91392 0.66 0.811403
Target:  5'- gGGGGUGGgagccaaagaggcaGGCAGGGGccGGUUGGCC-Ca -3'
miRNA:   3'- -CUCCACCa-------------CUGUCCUC--CCGACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 26366 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 32504 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 23297 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 29435 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 14091 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 20228 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 63099 0.66 0.799205
Target:  5'- cGGG-GGUGGCAguGGAGGGggGAgCUUCa -3'
miRNA:   3'- cUCCaCCACUGU--CCUCCCgaCU-GGAG- -5'
33292 3' -58.9 NC_007605.1 + 36975 0.66 0.790316
Target:  5'- cAGGUGGcagaggGGUAGGAGGGgUaGGCCUUg -3'
miRNA:   3'- cUCCACCa-----CUGUCCUCCCgA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 166754 0.66 0.781288
Target:  5'- uGGGUccucGG-GGCAGGGGuGGCUaGGCCUg -3'
miRNA:   3'- cUCCA----CCaCUGUCCUC-CCGA-CUGGAg -5'
33292 3' -58.9 NC_007605.1 + 58023 0.66 0.772132
Target:  5'- cGGGGaUGGggaugaaGAgGGGAGGGCUGgagGCCg- -3'
miRNA:   3'- -CUCC-ACCa------CUgUCCUCCCGAC---UGGag -5'
33292 3' -58.9 NC_007605.1 + 150854 0.67 0.753465
Target:  5'- cAGGUGGacagGGCcgAGGAGGGCUGGg--- -3'
miRNA:   3'- cUCCACCa---CUG--UCCUCCCGACUggag -5'
33292 3' -58.9 NC_007605.1 + 36562 0.67 0.743972
Target:  5'- gGGGGUGGUGGUGGGGGGGgUGGu--- -3'
miRNA:   3'- -CUCCACCACUGUCCUCCCgACUggag -5'
33292 3' -58.9 NC_007605.1 + 51448 0.67 0.734384
Target:  5'- aAGGUGGccccUGGCAGGcccAGGGaCUGGCUg- -3'
miRNA:   3'- cUCCACC----ACUGUCC---UCCC-GACUGGag -5'
33292 3' -58.9 NC_007605.1 + 85411 0.67 0.71496
Target:  5'- uGAGGaGGUGGCguGGGAguGGGCgccccccgaGGCCUCu -3'
miRNA:   3'- -CUCCaCCACUG--UCCU--CCCGa--------CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 137576 0.67 0.71496
Target:  5'- uGGGGUGGcUGGCGGGcuGGGGgaGGCg-- -3'
miRNA:   3'- -CUCCACC-ACUGUCC--UCCCgaCUGgag -5'
33292 3' -58.9 NC_007605.1 + 85471 0.67 0.71496
Target:  5'- uGAGGaGGUGGCguGGGAguGGGCgccccccgaGGCCUCu -3'
miRNA:   3'- -CUCCaCCACUG--UCCU--CCCGa--------CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 63610 0.67 0.713982
Target:  5'- gGGGGUGGcgGugGaguaugcuucgucGGGGGGCUgGGCCUg -3'
miRNA:   3'- -CUCCACCa-CugU-------------CCUCCCGA-CUGGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.