Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 51381 | 1.1 | 0.001114 |
Target: 5'- cCCCGGGAUUGGCCGCCCCCAUCACUCu -3' miRNA: 3'- -GGGCCCUAACCGGCGGGGGUAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 162399 | 0.78 | 0.198807 |
Target: 5'- cCCCGGGcUUGGCCagaGCCCCCcagaguggcuaaaggGUCACUa -3' miRNA: 3'- -GGGCCCuAACCGG---CGGGGG---------------UAGUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 104264 | 0.78 | 0.19692 |
Target: 5'- gCCCGGGggUGGCaGCCCCC-UC-CUCc -3' miRNA: 3'- -GGGCCCuaACCGgCGGGGGuAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 143074 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142972 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142871 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 50734 | 0.75 | 0.272835 |
Target: 5'- cCCUGGGGUccggcuUGGCCGCCCCgGcgCACa- -3' miRNA: 3'- -GGGCCCUA------ACCGGCGGGGgUa-GUGag -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 143278 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 143176 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142769 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142667 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142565 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142157 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141852 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142055 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142259 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 141953 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142463 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 142361 | 0.75 | 0.291886 |
Target: 5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3' miRNA: 3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 59140 | 0.75 | 0.278443 |
Target: 5'- cCCCGGGugcgcUGGCUuuGCCCCCAgucgccgUUACUCa -3' miRNA: 3'- -GGGCCCua---ACCGG--CGGGGGU-------AGUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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