miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 171580 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 171296 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 171042 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 170759 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 170520 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 170236 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 169982 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 169699 0.68 0.643169
Target:  5'- gCCgCGGGGgaaGGCCacGCCCCCucCACUUu -3'
miRNA:   3'- -GG-GCCCUaa-CCGG--CGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 164820 0.66 0.779789
Target:  5'- aCCCGGGAUgagaaagaccugccuUuGCCaGCCCUgGUC-CUCu -3'
miRNA:   3'- -GGGCCCUA---------------AcCGG-CGGGGgUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 162988 0.72 0.402495
Target:  5'- -gCGGGGgcGGCCGCCaguCCCAugugcUCGCUCu -3'
miRNA:   3'- ggGCCCUaaCCGGCGG---GGGU-----AGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 162795 0.71 0.471397
Target:  5'- -aUGGGAcuggcGGCCGCCCCCGcCACg- -3'
miRNA:   3'- ggGCCCUaa---CCGGCGGGGGUaGUGag -5'
33294 3' -60.5 NC_007605.1 + 162399 0.78 0.198807
Target:  5'- cCCCGGGcUUGGCCagaGCCCCCcagaguggcuaaaggGUCACUa -3'
miRNA:   3'- -GGGCCCuAACCGG---CGGGGG---------------UAGUGAg -5'
33294 3' -60.5 NC_007605.1 + 160011 0.67 0.679349
Target:  5'- gCCCGGGAccgcgcccuccucugGGCCGCCCggCC-UCGCc- -3'
miRNA:   3'- -GGGCCCUaa-------------CCGGCGGG--GGuAGUGag -5'
33294 3' -60.5 NC_007605.1 + 159846 0.69 0.583441
Target:  5'- -gCGGGAaUGGCCGCcacccucccccugCCCCGUUGCa- -3'
miRNA:   3'- ggGCCCUaACCGGCG-------------GGGGUAGUGag -5'
33294 3' -60.5 NC_007605.1 + 153242 0.72 0.422499
Target:  5'- gCCGGGuccucGGCCaucuccgucuuucucGCCCCCuUCACUCc -3'
miRNA:   3'- gGGCCCuaa--CCGG---------------CGGGGGuAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 151279 0.66 0.743342
Target:  5'- gCCCaGGGGggcaaauugcgugucUggGGCCGCCugagCCCAUC-CUCg -3'
miRNA:   3'- -GGG-CCCU---------------Aa-CCGGCGG----GGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 148750 0.67 0.691965
Target:  5'- cCCUGGuGAgcccuuGCCGCUCCCcgCAUUCc -3'
miRNA:   3'- -GGGCC-CUaac---CGGCGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 144057 0.69 0.555377
Target:  5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3'
miRNA:   3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143278 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143176 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.