Results 1 - 20 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33297 | 3' | -65.3 | NC_007605.1 | + | 52526 | 1.09 | 0.000532 |
Target: 5'- cCCGAGCCGCCCUCUGGCCGCACCCCGa -3' miRNA: 3'- -GGCUCGGCGGGAGACCGGCGUGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 142959 | 0.73 | 0.225826 |
Target: 5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3' miRNA: 3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 142756 | 0.73 | 0.225826 |
Target: 5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3' miRNA: 3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 2504 | 0.66 | 0.577052 |
Target: 5'- cCCG-GCCaccagaaggGCCCUCUGGaaGC-CCgCCGc -3' miRNA: 3'- -GGCuCGG---------CGGGAGACCggCGuGG-GGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 39733 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 39608 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 39358 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 39233 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 38734 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 143061 | 0.73 | 0.225826 |
Target: 5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3' miRNA: 3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 38484 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 38859 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 46853 | 0.75 | 0.156321 |
Target: 5'- -gGAGCUGCCC-CUGGagaacacaUGCGCCCCGg -3' miRNA: 3'- ggCUCGGCGGGaGACCg-------GCGUGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 143265 | 0.73 | 0.225826 |
Target: 5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3' miRNA: 3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 61209 | 0.75 | 0.171733 |
Target: 5'- aCGAGCUGCCCaaaacccgcucUCUGGCCGC-CCUg- -3' miRNA: 3'- gGCUCGGCGGG-----------AGACCGGCGuGGGgc -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 38984 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 143163 | 0.73 | 0.225826 |
Target: 5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3' miRNA: 3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 142858 | 0.73 | 0.225826 |
Target: 5'- cCCG-GCCGCCCcccgagcUCcagGGCCGgaACCCCGg -3' miRNA: 3'- -GGCuCGGCGGG-------AGa--CCGGCg-UGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 39858 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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33297 | 3' | -65.3 | NC_007605.1 | + | 39483 | 0.73 | 0.211439 |
Target: 5'- aCCGgcGGCCGCCC---GGCUGC-CCCCGg -3' miRNA: 3'- -GGC--UCGGCGGGagaCCGGCGuGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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