miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 5' -52.5 NC_007605.1 + 53093 0.66 0.990025
Target:  5'- aGGCCggguuaagggGGUCgCAgggagacucuguuucCAGCCAGAGggugcCGGCg -3'
miRNA:   3'- -CCGGa---------CCAG-GU---------------GUUGGUUUCau---GCCG- -5'
33297 5' -52.5 NC_007605.1 + 89759 0.66 0.989498
Target:  5'- aGGUCUGGccgguggauccUCCACcGCCGguuaacuuuaacAAG-ACGGCc -3'
miRNA:   3'- -CCGGACC-----------AGGUGuUGGU------------UUCaUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 30635 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 150322 0.66 0.989498
Target:  5'- aGUCUGGUgCUGgGGCCGAuGUGCaGCg -3'
miRNA:   3'- cCGGACCA-GGUgUUGGUUuCAUGcCG- -5'
33297 5' -52.5 NC_007605.1 + 27566 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 24497 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 104046 0.66 0.989498
Target:  5'- -cCCUGGUcaaguaCCACGACCuGGAGgagGgGGCu -3'
miRNA:   3'- ccGGACCA------GGUGUUGG-UUUCa--UgCCG- -5'
33297 5' -52.5 NC_007605.1 + 33704 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 61986 0.66 0.989498
Target:  5'- aGGcCCUGG-CCGCucguGugCAGGagGCGGCg -3'
miRNA:   3'- -CC-GGACCaGGUG----UugGUUUcaUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 15290 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 21428 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 159989 0.66 0.989498
Target:  5'- cGCCUGGcCCugGugCGGGGgGCcugcgaggaGGCg -3'
miRNA:   3'- cCGGACCaGGugUugGUUUCaUG---------CCG- -5'
33297 5' -52.5 NC_007605.1 + 18359 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 12221 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 66295 0.66 0.989498
Target:  5'- uGGCuCUGGUCCACA---AAGGg--GGCc -3'
miRNA:   3'- -CCG-GACCAGGUGUuggUUUCaugCCG- -5'
33297 5' -52.5 NC_007605.1 + 47749 0.66 0.989088
Target:  5'- gGGCCUgcaacgucaGGUCCACcucagaaacaucagGAgCAGGGccACGGCc -3'
miRNA:   3'- -CCGGA---------CCAGGUG--------------UUgGUUUCa-UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 136478 0.66 0.988231
Target:  5'- cGCCUuccuacGGUCCugGgGCCGGAGcggucgccccggccgGCGGCu -3'
miRNA:   3'- cCGGA------CCAGGugU-UGGUUUCa--------------UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 14284 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 20422 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 81910 0.66 0.988083
Target:  5'- uGCUgaugUGGUCCggGCAcCUggGGUAcCGGCg -3'
miRNA:   3'- cCGG----ACCAGG--UGUuGGuuUCAU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.