miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 3' -52.6 NC_007605.1 + 115812 0.66 0.991069
Target:  5'- aCCCgUCCg-GUCACugaaGAgagUCuGGCACCa -3'
miRNA:   3'- -GGGgAGGagUAGUG----CUaa-AG-CCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 155896 0.66 0.989835
Target:  5'- gCCCUCUUgGgCACGc---UGGCGCCa -3'
miRNA:   3'- gGGGAGGAgUaGUGCuaaaGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 119078 0.66 0.988471
Target:  5'- gUCCUguUCCUauuaGUCACagccuguaGAUUUgGGCACCc -3'
miRNA:   3'- -GGGG--AGGAg---UAGUG--------CUAAAgCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 151137 0.66 0.988471
Target:  5'- gCCCCagCUcCGUCACGGgg--GGCGCa -3'
miRNA:   3'- -GGGGagGA-GUAGUGCUaaagCCGUGg -5'
33300 3' -52.6 NC_007605.1 + 105258 0.66 0.988471
Target:  5'- cCCCCgagugCC-CGUCGCGugucugaGGUGCCa -3'
miRNA:   3'- -GGGGa----GGaGUAGUGCuaaag--CCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 116097 0.66 0.988327
Target:  5'- cCCCCUCCUCGugcaccuauuuguUCccgacACGGUUaUGGCAg- -3'
miRNA:   3'- -GGGGAGGAGU-------------AG-----UGCUAAaGCCGUgg -5'
33300 3' -52.6 NC_007605.1 + 59447 0.66 0.985321
Target:  5'- aCCCC-CCUUAUCucuCGg---CGGCuGCCg -3'
miRNA:   3'- -GGGGaGGAGUAGu--GCuaaaGCCG-UGG- -5'
33300 3' -52.6 NC_007605.1 + 152195 0.67 0.983518
Target:  5'- aUCCUCCUCAUUACcAUg--GGCcCCg -3'
miRNA:   3'- gGGGAGGAGUAGUGcUAaagCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 127313 0.67 0.983518
Target:  5'- gCCCgCUUCAuUCACGGggcCGuGCACCu -3'
miRNA:   3'- gGGGaGGAGU-AGUGCUaaaGC-CGUGG- -5'
33300 3' -52.6 NC_007605.1 + 159546 0.67 0.983518
Target:  5'- aCgCCUCCUCcUCGCc---UCGGC-CCa -3'
miRNA:   3'- -GgGGAGGAGuAGUGcuaaAGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 150609 0.67 0.983518
Target:  5'- gCCCUCC-CGg-GCGGUgggCGGC-CCg -3'
miRNA:   3'- gGGGAGGaGUagUGCUAaa-GCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 73373 0.67 0.983329
Target:  5'- aCCCCUUCUCAUCccaccugGCGGaggUCGucucCACCc -3'
miRNA:   3'- -GGGGAGGAGUAG-------UGCUaa-AGCc---GUGG- -5'
33300 3' -52.6 NC_007605.1 + 85385 0.67 0.977103
Target:  5'- cCCCCgaggCCUCugccggggaACGGg--UGGCACCu -3'
miRNA:   3'- -GGGGa---GGAGuag------UGCUaaaGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 101171 0.67 0.973549
Target:  5'- gCCCUCUUCAUCAacaacaagCGcuGCACCg -3'
miRNA:   3'- gGGGAGGAGUAGUgcuaaa--GC--CGUGG- -5'
33300 3' -52.6 NC_007605.1 + 73921 0.68 0.971909
Target:  5'- uCCCCUggCCUCggC-CGAUcUCGuGCGCUa -3'
miRNA:   3'- -GGGGA--GGAGuaGuGCUAaAGC-CGUGG- -5'
33300 3' -52.6 NC_007605.1 + 76089 0.68 0.971909
Target:  5'- uCCCgUCCg-GUCACGucucaugUUGGCAUCa -3'
miRNA:   3'- -GGGgAGGagUAGUGCuaa----AGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 14943 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 18012 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 30287 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 33356 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.