miRNA display CGI


Results 1 - 20 of 385 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 3' -69.2 NC_007605.1 + 104538 0.66 0.38285
Target:  5'- uGGCCGUCUggcaggGGgCCGGGC-GCGcuCCg -3'
miRNA:   3'- uCCGGCGGGa-----CCgGGCCCGuCGCc-GG- -5'
33301 3' -69.2 NC_007605.1 + 10770 0.66 0.38285
Target:  5'- cGuCUGCCCUgcaaGGCCUGGGCccgGGCCu -3'
miRNA:   3'- uCcGGCGGGA----CCGGGCCCGucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 61469 0.66 0.381336
Target:  5'- gGGGCCGCUg-GuGCgCCGGGCucgucuguccaCGGCCu -3'
miRNA:   3'- -UCCGGCGGgaC-CG-GGCCCGuc---------GCCGG- -5'
33301 3' -69.2 NC_007605.1 + 133224 0.66 0.375317
Target:  5'- gGGGCCuguguCCCUGGgCaguCGGGCGG-GGUCu -3'
miRNA:   3'- -UCCGGc----GGGACCgG---GCCCGUCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 104281 0.66 0.375317
Target:  5'- cAGGCC-CUCauuccacGGCCCGGG-GGUGGCa -3'
miRNA:   3'- -UCCGGcGGGa------CCGGGCCCgUCGCCGg -5'
33301 3' -69.2 NC_007605.1 + 61436 0.66 0.375317
Target:  5'- -aGCCGUCgC-GGCggGGGCGGCGGCg -3'
miRNA:   3'- ucCGGCGG-GaCCGggCCCGUCGCCGg -5'
33301 3' -69.2 NC_007605.1 + 158595 0.66 0.375317
Target:  5'- uAGGCUGCaCCguggUGGCggGGGguGCGGgCu -3'
miRNA:   3'- -UCCGGCG-GG----ACCGggCCCguCGCCgG- -5'
33301 3' -69.2 NC_007605.1 + 105217 0.66 0.375317
Target:  5'- cGGCCGCgUguaGGagaaCCCGGGUgacGGCGGUg -3'
miRNA:   3'- uCCGGCGgGa--CC----GGGCCCG---UCGCCGg -5'
33301 3' -69.2 NC_007605.1 + 53430 0.66 0.373823
Target:  5'- cGGGUCGguguggcCCCUGGCCUGGGUgaccagauccugcAGCGuucCCu -3'
miRNA:   3'- -UCCGGC-------GGGACCGGGCCCG-------------UCGCc--GG- -5'
33301 3' -69.2 NC_007605.1 + 28098 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 18892 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 31167 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 25029 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 10703 0.66 0.367886
Target:  5'- cGGGCgGCUC-GGCUaaGGagGGCGGCCu -3'
miRNA:   3'- -UCCGgCGGGaCCGGgcCCg-UCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 15823 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 80459 0.66 0.367886
Target:  5'- uGGCCGCCggaUGGCCUauGGGUuaccaggcauacAGCaGCUg -3'
miRNA:   3'- uCCGGCGGg--ACCGGG--CCCG------------UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 12754 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 21960 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 34236 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 148109 0.66 0.367148
Target:  5'- aAGGUaagGCCCacgGGUCacgGGGCAGCcgcaccgGGCCg -3'
miRNA:   3'- -UCCGg--CGGGa--CCGGg--CCCGUCG-------CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.