miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 165360 0.7 0.802786
Target:  5'- gCCCGAgGGCgUGGAgcccGCACCaaCUGC-GGCa -3'
miRNA:   3'- -GGGCUaCUG-ACCU----UGUGG--GACGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 164911 0.66 0.941958
Target:  5'- cCCCGGUcgaGGCgUGGGucGCGCCCUcGCcgccggacgacaaggUGGCu -3'
miRNA:   3'- -GGGCUA---CUG-ACCU--UGUGGGA-CG---------------ACCG- -5'
33303 5' -55.4 NC_007605.1 + 160841 0.7 0.806299
Target:  5'- cCCCGGaGuCUGGAcguggcugcggugguGCGCaacgccggCCUGCUGGCc -3'
miRNA:   3'- -GGGCUaCuGACCU---------------UGUG--------GGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 159696 0.67 0.925149
Target:  5'- cCCCGGccGGCUGGGGCacgagaGCCCgGCccguccGGCg -3'
miRNA:   3'- -GGGCUa-CUGACCUUG------UGGGaCGa-----CCG- -5'
33303 5' -55.4 NC_007605.1 + 159626 0.7 0.766411
Target:  5'- gCCCGGU-ACUGGGgguGCGCCgUGaaGGCg -3'
miRNA:   3'- -GGGCUAcUGACCU---UGUGGgACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 158149 0.7 0.793898
Target:  5'- cUCCGucUGGCUGGcguagcggcGCACCCcGUUGGCc -3'
miRNA:   3'- -GGGCu-ACUGACCu--------UGUGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 157461 0.73 0.628099
Target:  5'- aCCGcAUG-CUGGGAgACCUUGCgcgGGCc -3'
miRNA:   3'- gGGC-UACuGACCUUgUGGGACGa--CCG- -5'
33303 5' -55.4 NC_007605.1 + 157366 0.69 0.836744
Target:  5'- uCCCGggGGCcguggGGGGCACCggugUGgUGGCg -3'
miRNA:   3'- -GGGCuaCUGa----CCUUGUGGg---ACgACCG- -5'
33303 5' -55.4 NC_007605.1 + 156221 0.7 0.811522
Target:  5'- cCCUGGcUGcCUGcAAUGCUCUGCUGGCc -3'
miRNA:   3'- -GGGCU-ACuGACcUUGUGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 152465 0.76 0.480311
Target:  5'- aCCCGggGGCcauggUGGAgaGCAUCUUGCUGGUc -3'
miRNA:   3'- -GGGCuaCUG-----ACCU--UGUGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 150842 0.69 0.828509
Target:  5'- gCCGAggagGGCUGGGucugcgACGuuCUGCUGGa -3'
miRNA:   3'- gGGCUa---CUGACCU------UGUggGACGACCg -5'
33303 5' -55.4 NC_007605.1 + 143367 0.69 0.852661
Target:  5'- gCgGGUGGCgcgGGGu--CCCUGcCUGGCa -3'
miRNA:   3'- gGgCUACUGa--CCUuguGGGAC-GACCG- -5'
33303 5' -55.4 NC_007605.1 + 137120 0.7 0.775702
Target:  5'- cCCCGAgUGGgUGuAGCagggGCCCUGCUGGg -3'
miRNA:   3'- -GGGCU-ACUgACcUUG----UGGGACGACCg -5'
33303 5' -55.4 NC_007605.1 + 136557 0.66 0.935364
Target:  5'- gCCCGcgGGCgGGGACccggguGCCUUcUUGGCg -3'
miRNA:   3'- -GGGCuaCUGaCCUUG------UGGGAcGACCG- -5'
33303 5' -55.4 NC_007605.1 + 135843 0.66 0.944646
Target:  5'- aCUGAgccGACcGGAGCAUCCgGCaGGUg -3'
miRNA:   3'- gGGCUa--CUGaCCUUGUGGGaCGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 135714 0.71 0.747489
Target:  5'- cCUCGAUuaccuCUGGGACuuccuguCCCUGCUGGa -3'
miRNA:   3'- -GGGCUAcu---GACCUUGu------GGGACGACCg -5'
33303 5' -55.4 NC_007605.1 + 134565 0.68 0.875055
Target:  5'- gUCGGUGuugccCUGGGGCGCCCcucgcccaUGCUugcGGCg -3'
miRNA:   3'- gGGCUACu----GACCUUGUGGG--------ACGA---CCG- -5'
33303 5' -55.4 NC_007605.1 + 132626 0.7 0.770142
Target:  5'- cCCCGGgugggauccaUGGCUGGAuuuccaggaaaggagGCcggcccGCCCggcgGCUGGCg -3'
miRNA:   3'- -GGGCU----------ACUGACCU---------------UG------UGGGa---CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 132091 0.66 0.944646
Target:  5'- gCUGGUGGCUGG-GCucCCCUG--GGCa -3'
miRNA:   3'- gGGCUACUGACCuUGu-GGGACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 126098 0.66 0.928312
Target:  5'- gCCCGGaGACUGGuGGCcCuCCUGCgaagggaagauggGGCa -3'
miRNA:   3'- -GGGCUaCUGACC-UUGuG-GGACGa------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.