Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33303 | 5' | -55.4 | NC_007605.1 | + | 54989 | 1.12 | 0.00238 |
Target: 5'- gCCCGAUGACUGGAACACCCUGCUGGCc -3' miRNA: 3'- -GGGCUACUGACCUUGUGGGACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 150842 | 0.69 | 0.828509 |
Target: 5'- gCCGAggagGGCUGGGucugcgACGuuCUGCUGGa -3' miRNA: 3'- gGGCUa---CUGACCU------UGUggGACGACCg -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 143367 | 0.69 | 0.852661 |
Target: 5'- gCgGGUGGCgcgGGGu--CCCUGcCUGGCa -3' miRNA: 3'- gGgCUACUGa--CCUuguGGGAC-GACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 2297 | 0.66 | 0.953009 |
Target: 5'- uUCCGcgGACcaugUGGAAgGCCUUGCcauccagucUGGUc -3' miRNA: 3'- -GGGCuaCUG----ACCUUgUGGGACG---------ACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 24809 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 21740 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 15602 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 12533 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 105807 | 0.71 | 0.757004 |
Target: 5'- aCCUGGgagucuCUGGGACGCCC--CUGGCa -3' miRNA: 3'- -GGGCUacu---GACCUUGUGGGacGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 160841 | 0.7 | 0.806299 |
Target: 5'- cCCCGGaGuCUGGAcguggcugcggugguGCGCaacgccggCCUGCUGGCc -3' miRNA: 3'- -GGGCUaCuGACCU---------------UGUG--------GGACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 132626 | 0.7 | 0.770142 |
Target: 5'- cCCCGGgugggauccaUGGCUGGAuuuccaggaaaggagGCcggcccGCCCggcgGCUGGCg -3' miRNA: 3'- -GGGCU----------ACUGACCU---------------UG------UGGGa---CGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 61879 | 0.72 | 0.678604 |
Target: 5'- aCCG-UGGCgggGGAcuACGCCaugaUGCUGGCc -3' miRNA: 3'- gGGCuACUGa--CCU--UGUGGg---ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 34016 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 137120 | 0.7 | 0.775702 |
Target: 5'- cCCCGAgUGGgUGuAGCagggGCCCUGCUGGg -3' miRNA: 3'- -GGGCU-ACUgACcUUG----UGGGACGACCg -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 30947 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 157461 | 0.73 | 0.628099 |
Target: 5'- aCCGcAUG-CUGGGAgACCUUGCgcgGGCc -3' miRNA: 3'- gGGC-UACuGACCUUgUGGGACGa--CCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 15148 | 0.7 | 0.797471 |
Target: 5'- gCCCGggGACUgGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3' miRNA: 3'- -GGGCuaCUGA-CCUUG---------------UGGGAC-GAC--CG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 61195 | 0.69 | 0.836744 |
Target: 5'- aCCCGcucuCUGGc-CGCCCUgcGCUGGCu -3' miRNA: 3'- -GGGCuacuGACCuuGUGGGA--CGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 27878 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 18671 | 0.74 | 0.576656 |
Target: 5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3' miRNA: 3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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