miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33322 5' -57.6 NC_007605.1 + 159746 0.66 0.881195
Target:  5'- aGCGGuuggGCCgAGGCGaggaggAGGCguCCCGGg -3'
miRNA:   3'- cCGUCua--CGG-UCCGUaa----UCCG--GGGCC- -5'
33322 5' -57.6 NC_007605.1 + 141756 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 140941 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 140839 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 142266 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 142164 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141247 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141655 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 142368 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141145 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141451 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 77603 0.66 0.874176
Target:  5'- uGGCugguGGUGCCuGGGCG--GGGUgCUGGc -3'
miRNA:   3'- -CCGu---CUACGG-UCCGUaaUCCGgGGCC- -5'
33322 5' -57.6 NC_007605.1 + 141960 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141043 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141858 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141349 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 140737 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 142062 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 142572 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5'
33322 5' -57.6 NC_007605.1 + 141553 0.66 0.874176
Target:  5'- gGGgGGcgGCCGGGU----GGCCcaCCGGg -3'
miRNA:   3'- -CCgUCuaCGGUCCGuaauCCGG--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.