miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33338 5' -54.7 NC_007605.1 + 60270 0.66 0.955476
Target:  5'- uCUGAGGGuGGccGUGucGGCCGUGGc-- -3'
miRNA:   3'- -GACUCCCuCUuuUAC--CCGGCGCCuac -5'
33338 5' -54.7 NC_007605.1 + 114048 0.66 0.955476
Target:  5'- uUGAGGuGGuAAAgacGUGGGCCGUGGu-- -3'
miRNA:   3'- gACUCCcUC-UUU---UACCCGGCGCCuac -5'
33338 5' -54.7 NC_007605.1 + 72014 0.66 0.955476
Target:  5'- gCUGAuGGAG-AAAUGGGCgGuCGGuUGa -3'
miRNA:   3'- -GACUcCCUCuUUUACCCGgC-GCCuAC- -5'
33338 5' -54.7 NC_007605.1 + 139462 0.66 0.955476
Target:  5'- uUGGGGaGGGggGGUGGGUa-CGGGa- -3'
miRNA:   3'- gACUCC-CUCuuUUACCCGgcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 59934 0.66 0.954304
Target:  5'- gCUGAGGGG--AGGUGGGgugucugcucccccCUGCGGAa- -3'
miRNA:   3'- -GACUCCCUcuUUUACCC--------------GGCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 36645 0.66 0.947271
Target:  5'- gUGGGGGuGGug--GGGgCGgGGGUGg -3'
miRNA:   3'- gACUCCCuCUuuuaCCCgGCgCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 151054 0.66 0.938126
Target:  5'- aUGuGGGcGAGGAUGGGCUcagGCGGc-- -3'
miRNA:   3'- gACuCCCuCUUUUACCCGG---CGCCuac -5'
33338 5' -54.7 NC_007605.1 + 63321 0.66 0.938126
Target:  5'- -cGAGGcAGGugg-GGGCCugacGCGGAUGg -3'
miRNA:   3'- gaCUCCcUCUuuuaCCCGG----CGCCUAC- -5'
33338 5' -54.7 NC_007605.1 + 41839 0.66 0.938126
Target:  5'- cCUGAGGGAGc-----GGCCGuuGGUGg -3'
miRNA:   3'- -GACUCCCUCuuuuacCCGGCgcCUAC- -5'
33338 5' -54.7 NC_007605.1 + 161014 0.66 0.938126
Target:  5'- gCUGGGuGGAGGAGGgcaGGGCUcCGGGg- -3'
miRNA:   3'- -GACUC-CCUCUUUUa--CCCGGcGCCUac -5'
33338 5' -54.7 NC_007605.1 + 119778 0.66 0.938126
Target:  5'- -gGAGGGcAGAGAG-GGGCaccaauuucCGCGGAc- -3'
miRNA:   3'- gaCUCCC-UCUUUUaCCCG---------GCGCCUac -5'
33338 5' -54.7 NC_007605.1 + 19544 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 34889 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 25682 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 28751 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 31820 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 22613 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 136625 0.67 0.933195
Target:  5'- --aAGGGGGGcAGcgGGGCCGCguaGGGUa -3'
miRNA:   3'- gacUCCCUCU-UUuaCCCGGCG---CCUAc -5'
33338 5' -54.7 NC_007605.1 + 13406 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5'
33338 5' -54.7 NC_007605.1 + 16475 0.67 0.933195
Target:  5'- -aGGGGGAcagaGAGAA-GGGCCgGUGGggGg -3'
miRNA:   3'- gaCUCCCU----CUUUUaCCCGG-CGCCuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.