miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 57645 0.7 1
Target:  5'- --uUCGAGGGAGCu--GCCugUg -3'
miRNA:   3'- gauAGUUCCUUUGuuuUGGugA- -5'
33372 3' -36.5 NC_007605.1 + 106432 0.73 1
Target:  5'- -aGUCGAGGgcGCGuuGACCACg -3'
miRNA:   3'- gaUAGUUCCuuUGUu-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 96601 0.73 1
Target:  5'- -gGUCGAGGAgguaGugGAGGCCGCc -3'
miRNA:   3'- gaUAGUUCCU----UugUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 96553 0.73 1
Target:  5'- -gGUCGAGGAGGCAguggAGGCCGg- -3'
miRNA:   3'- gaUAGUUCCUUUGU----UUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 63692 0.72 1
Target:  5'- cCUAU-GAGGAAGCcGGGCCGCg -3'
miRNA:   3'- -GAUAgUUCCUUUGuUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 62049 0.72 1
Target:  5'- ---cCAGGGGcAGCGAGGCCACc -3'
miRNA:   3'- gauaGUUCCU-UUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 44654 0.71 1
Target:  5'- -gGUCAAGGccguggaugcGCAGGACCACg -3'
miRNA:   3'- gaUAGUUCCuu--------UGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 139379 0.71 1
Target:  5'- ----gAGGGAAACAuGACCACc -3'
miRNA:   3'- gauagUUCCUUUGUuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 125681 0.71 1
Target:  5'- gCUGUCAuGGccAAACAAuGCCACa -3'
miRNA:   3'- -GAUAGUuCC--UUUGUUuUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 140426 0.74 1
Target:  5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3'
miRNA:   3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5'
33372 3' -36.5 NC_007605.1 + 76941 0.75 1
Target:  5'- cCUggUGAGGGAACAcGACCACg -3'
miRNA:   3'- -GAuaGUUCCUUUGUuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 133952 0.76 1
Target:  5'- cCUGUUuguGGGAGCGGGACUACUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 166909 0.69 1
Target:  5'- ---aCAAGGAAAgAAGGCCAg- -3'
miRNA:   3'- gauaGUUCCUUUgUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 139562 0.69 1
Target:  5'- gUAUCGcuGGAAACcgguGGGCCGCUg -3'
miRNA:   3'- gAUAGUu-CCUUUGu---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 130262 0.69 1
Target:  5'- ---gCAGGGGAAUucAGGCCGCUa -3'
miRNA:   3'- gauaGUUCCUUUGu-UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 150571 0.69 1
Target:  5'- --uUCAGGGucACGAGACCGg- -3'
miRNA:   3'- gauAGUUCCuuUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 58746 0.68 1
Target:  5'- uCUGggCAGGGAauagGACGAGGCCAa- -3'
miRNA:   3'- -GAUa-GUUCCU----UUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 53986 0.66 1
Target:  5'- -aGUC-AGGAggUAcauGGGCCACUg -3'
miRNA:   3'- gaUAGuUCCUuuGU---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 83631 0.69 1
Target:  5'- -aGUCAGGGGggGACAAuguCCACc -3'
miRNA:   3'- gaUAGUUCCU--UUGUUuu-GGUGa -5'
33372 3' -36.5 NC_007605.1 + 154812 0.69 1
Target:  5'- aUGUCGAuGGGGAUGAGGCCGgUg -3'
miRNA:   3'- gAUAGUU-CCUUUGUUUUGGUgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.