miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 5' -60.7 NC_007605.1 + 81705 0.66 0.767228
Target:  5'- -aGGCCUgccccgcagcCUGugUcaGGGAUGGCUcCCAg -3'
miRNA:   3'- agCCGGA----------GACugG--CCCUGCCGAuGGU- -5'
33399 5' -60.7 NC_007605.1 + 54020 0.66 0.767228
Target:  5'- cUGGCC-CgggcagcGGCCGGGAaCGGCUcaugGCCc -3'
miRNA:   3'- aGCCGGaGa------CUGGCCCU-GCCGA----UGGu -5'
33399 5' -60.7 NC_007605.1 + 58059 0.66 0.767228
Target:  5'- -gGGCCgCggaGGCCGGGGCcGCggagGCCGg -3'
miRNA:   3'- agCCGGaGa--CUGGCCCUGcCGa---UGGU- -5'
33399 5' -60.7 NC_007605.1 + 58089 0.66 0.767228
Target:  5'- -gGGCCgCggaGGCCGGGGCcGCggagGCCGg -3'
miRNA:   3'- agCCGGaGa--CUGGCCCUGcCGa---UGGU- -5'
33399 5' -60.7 NC_007605.1 + 163001 0.66 0.758122
Target:  5'- -gGGCagcuacgUGGCgGGGGCGGCcGCCAg -3'
miRNA:   3'- agCCGgag----ACUGgCCCUGCCGaUGGU- -5'
33399 5' -60.7 NC_007605.1 + 169728 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 50478 0.66 0.748913
Target:  5'- -gGGCCUUUGugCuugcguuuuuugGGGGCGcGgUGCCAa -3'
miRNA:   3'- agCCGGAGACugG------------CCCUGC-CgAUGGU- -5'
33399 5' -60.7 NC_007605.1 + 171325 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 170265 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 170788 0.66 0.748913
Target:  5'- -aGcGCCgcUCUGugCGGGGgGGCUgggggGCCGc -3'
miRNA:   3'- agC-CGG--AGACugGCCCUgCCGA-----UGGU- -5'
33399 5' -60.7 NC_007605.1 + 61852 0.66 0.743342
Target:  5'- cUGGCCUCUGugccCCGGGugucccgcucGCGGUggagguggcucgagGCCAc -3'
miRNA:   3'- aGCCGGAGACu---GGCCC----------UGCCGa-------------UGGU- -5'
33399 5' -60.7 NC_007605.1 + 15183 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 33597 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 81656 0.66 0.720754
Target:  5'- -aGGCCca--GCCGGGGCGGgUACUg -3'
miRNA:   3'- agCCGGagacUGGCCCUGCCgAUGGu -5'
33399 5' -60.7 NC_007605.1 + 18252 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 21321 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 24390 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 27459 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 30528 0.66 0.720754
Target:  5'- -gGGUCUCUggagGACgGGGACGGaggggGCCu -3'
miRNA:   3'- agCCGGAGA----CUGgCCCUGCCga---UGGu -5'
33399 5' -60.7 NC_007605.1 + 53830 0.67 0.711217
Target:  5'- cCGGCCgCUGcCCGGGccAgGGCgGCCu -3'
miRNA:   3'- aGCCGGaGACuGGCCC--UgCCGaUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.