miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33402 3' -58.6 NC_007605.1 + 83863 0.66 0.828915
Target:  5'- gCGGCaGgagGCCCcgcggcAGGAGGcccCACGGCAGGa -3'
miRNA:   3'- -GUCG-Ca--CGGG------UUCUCCc--GUGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 77607 0.66 0.820549
Target:  5'- uGGUgGUGCCUggGcGGGGUGCuGGCGAa -3'
miRNA:   3'- gUCG-CACGGGuuC-UCCCGUG-CCGUUc -5'
33402 3' -58.6 NC_007605.1 + 8811 0.66 0.812017
Target:  5'- ---gGUGCCgGAGAcGGGCAgcuacgUGGCGGGg -3'
miRNA:   3'- gucgCACGGgUUCU-CCCGU------GCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 60225 0.66 0.810292
Target:  5'- -cGCGaUGCCCcggcucucccuGAGGGC-CGGCAc- -3'
miRNA:   3'- guCGC-ACGGGuu---------CUCCCGuGCCGUuc -5'
33402 3' -58.6 NC_007605.1 + 61237 0.66 0.803327
Target:  5'- gAGCaaGUGCUacaucuugAGGGGGGCugGGCAc- -3'
miRNA:   3'- gUCG--CACGGg-------UUCUCCCGugCCGUuc -5'
33402 3' -58.6 NC_007605.1 + 43931 0.66 0.803327
Target:  5'- gCGGgGUGCUCugaugcggaaAAGGGGGCGaucugauucaGGCAGGa -3'
miRNA:   3'- -GUCgCACGGG----------UUCUCCCGUg---------CCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 157866 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 61283 0.66 0.794486
Target:  5'- uCGGCGUgugGCCCcguGGGGGCgcagACGGCc-- -3'
miRNA:   3'- -GUCGCA---CGGGuu-CUCCCG----UGCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 151728 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 60916 0.66 0.794486
Target:  5'- uGGCGUauaugaGCUCGAGAGG--ACGGCGGGc -3'
miRNA:   3'- gUCGCA------CGGGUUCUCCcgUGCCGUUC- -5'
33402 3' -58.6 NC_007605.1 + 148660 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 139453 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 145591 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 142522 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 136384 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 154797 0.66 0.794486
Target:  5'- gGGgGcGCCCGGGGgucGGGCugGGCc-- -3'
miRNA:   3'- gUCgCaCGGGUUCU---CCCGugCCGuuc -5'
33402 3' -58.6 NC_007605.1 + 112335 0.66 0.785503
Target:  5'- gCGGCGgcgGCCCAgacagaGGAGaGGCGgaGGCAc- -3'
miRNA:   3'- -GUCGCa--CGGGU------UCUC-CCGUg-CCGUuc -5'
33402 3' -58.6 NC_007605.1 + 81402 0.66 0.785503
Target:  5'- gCAGCGgacggugggGCUCAuGGAGGG-GCGGCAGc -3'
miRNA:   3'- -GUCGCa--------CGGGU-UCUCCCgUGCCGUUc -5'
33402 3' -58.6 NC_007605.1 + 55433 0.67 0.776386
Target:  5'- uCAGCGagGCCCucuuugaucagGAGGGGGCGCugaGGCc-- -3'
miRNA:   3'- -GUCGCa-CGGG-----------UUCUCCCGUG---CCGuuc -5'
33402 3' -58.6 NC_007605.1 + 55785 0.67 0.776386
Target:  5'- -cGCGUGCCaaacugCGAGGGGGCcUGGUg-- -3'
miRNA:   3'- guCGCACGG------GUUCUCCCGuGCCGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.