Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 18620 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 12482 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 15551 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 33964 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 30896 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 27827 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 21689 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 24758 | 0.66 | 0.976525 |
Target: 5'- -cUGCUGucucaggaGGGGCCUgGCUccGCcgGGUGGCc -3' miRNA: 3'- uaACGAC--------UCUUGGA-CGA--CGa-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 165232 | 0.66 | 0.973876 |
Target: 5'- -gUGUUGGGAGCCccGCUGCggGGacgcuUGGUc -3' miRNA: 3'- uaACGACUCUUGGa-CGACGa-UC-----ACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 104520 | 0.66 | 0.971016 |
Target: 5'- --gGCUGAG-ACCa--UGCUcAGUGGCc -3' miRNA: 3'- uaaCGACUCuUGGacgACGA-UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 63038 | 0.66 | 0.969195 |
Target: 5'- --cGCUGAGugcggcGGCCgucuggcgcgcaggGCUGCUggccccgggggaGGUGGCg -3' miRNA: 3'- uaaCGACUC------UUGGa-------------CGACGA------------UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 105112 | 0.66 | 0.967937 |
Target: 5'- --cGCUucucACCUG-UGCUAGUGGCu -3' miRNA: 3'- uaaCGAcucuUGGACgACGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 74887 | 0.66 | 0.964634 |
Target: 5'- -cUGgaGGGGGCCUGC-GC-GGUGGa -3' miRNA: 3'- uaACgaCUCUUGGACGaCGaUCACCg -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 49399 | 0.66 | 0.9611 |
Target: 5'- --gGCaGAGAGCCaGUgugGCUGG-GGCu -3' miRNA: 3'- uaaCGaCUCUUGGaCGa--CGAUCaCCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 55000 | 0.67 | 0.958865 |
Target: 5'- uUUGUUGGGGgcaguguccagaaagGCCUcgaGCUGUUccucGGUGGCg -3' miRNA: 3'- uAACGACUCU---------------UGGA---CGACGA----UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 11326 | 0.67 | 0.958865 |
Target: 5'- --gGCUgGAGAGCCUGgaacgggcccuggauCUGCUGGgccgcuuucggGGCg -3' miRNA: 3'- uaaCGA-CUCUUGGAC---------------GACGAUCa----------CCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 8209 | 0.67 | 0.956937 |
Target: 5'- -cUGCUGgagaagcAGAGCCUGCaggaccagGCcaaGGUGGCc -3' miRNA: 3'- uaACGAC-------UCUUGGACGa-------CGa--UCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 63381 | 0.67 | 0.949052 |
Target: 5'- --gGCUGAccuggucccGGACUuuggGCgGCUGGUGGCc -3' miRNA: 3'- uaaCGACU---------CUUGGa---CGaCGAUCACCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 153400 | 0.67 | 0.94454 |
Target: 5'- --gGCUGAGAGCUUGCgGCUGa--GCu -3' miRNA: 3'- uaaCGACUCUUGGACGaCGAUcacCG- -5' |
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33424 | 3' | -52.7 | NC_007605.1 | + | 46686 | 0.68 | 0.936792 |
Target: 5'- --gGCUGAGGGgUUGUuucauagcuuugaccUGCUGGUGGg -3' miRNA: 3'- uaaCGACUCUUgGACG---------------ACGAUCACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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