Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33615 | 3' | -62.1 | NC_007605.1 | + | 140910 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141929 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141624 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 105615 | 0.66 | 0.687364 |
Target: 5'- gGCGUCCcagAGACUCCcaGGuucaGGUCCAGUa- -3' miRNA: 3'- -UGCAGG---UCUGAGG--CCc---CCAGGUCGgc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141012 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 142439 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 142541 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141114 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141420 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 142031 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141522 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 142643 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141318 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141827 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 140808 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 142235 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141725 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 142337 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 141216 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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33615 | 3' | -62.1 | NC_007605.1 | + | 142133 | 0.66 | 0.687364 |
Target: 5'- -aG-CCGGG-UCCGGGGuUCCGGCCc -3' miRNA: 3'- ugCaGGUCUgAGGCCCCcAGGUCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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