miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 3' -64.8 NC_007605.1 + 109602 0.66 0.591727
Target:  5'- uGGCCCGGCgGcGGGCgguagagauccuggGCGuguACGCGGa -3'
miRNA:   3'- gUCGGGCCGgC-UCCGga------------CGC---UGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 50666 0.66 0.59078
Target:  5'- gCAGCCCgacGGCCgugggGAGGC--GgGugGCGGa -3'
miRNA:   3'- -GUCGGG---CCGG-----CUCCGgaCgCugCGCC- -5'
33616 3' -64.8 NC_007605.1 + 132209 0.66 0.589834
Target:  5'- aCAGUCCGGUCGgagccaucaagggGGGCCaGUGG-GUGGg -3'
miRNA:   3'- -GUCGGGCCGGC-------------UCCGGaCGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 99800 0.66 0.581331
Target:  5'- -cGCCaguGGCCGGGGCC-GUGGagcCGgGGg -3'
miRNA:   3'- guCGGg--CCGGCUCCGGaCGCU---GCgCC- -5'
33616 3' -64.8 NC_007605.1 + 49969 0.66 0.581331
Target:  5'- uUAGCgucuuuCCGGCCGAGGCCUuuGGCa--- -3'
miRNA:   3'- -GUCG------GGCCGGCUCCGGAcgCUGcgcc -5'
33616 3' -64.8 NC_007605.1 + 11927 0.66 0.581331
Target:  5'- gCGGCUcuucugCGG-CGGGGUCUacagcuccucggGCGACGCGGu -3'
miRNA:   3'- -GUCGG------GCCgGCUCCGGA------------CGCUGCGCC- -5'
33616 3' -64.8 NC_007605.1 + 40310 0.66 0.581331
Target:  5'- gGGCCCGGCgGGGGUggGgGGUGCGc -3'
miRNA:   3'- gUCGGGCCGgCUCCGgaCgCUGCGCc -5'
33616 3' -64.8 NC_007605.1 + 59288 0.66 0.578503
Target:  5'- aGGCCCuGGCaCGAGGCCcggagcuccggccgUGUGGCcgaGGa -3'
miRNA:   3'- gUCGGG-CCG-GCUCCGG--------------ACGCUGcg-CC- -5'
33616 3' -64.8 NC_007605.1 + 20243 0.66 0.571914
Target:  5'- aGGCCCuGGCCGuGGCCagGUacgGGCugGUGGg -3'
miRNA:   3'- gUCGGG-CCGGCuCCGGa-CG---CUG--CGCC- -5'
33616 3' -64.8 NC_007605.1 + 169583 0.66 0.571914
Target:  5'- gGGUCCGcgggcuCCGGGGgCUGCGG-GCGGu -3'
miRNA:   3'- gUCGGGCc-----GGCUCCgGACGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 170120 0.66 0.571914
Target:  5'- gGGUCCGcgggcuCCGGGGgCUGCGG-GCGGu -3'
miRNA:   3'- gUCGGGCc-----GGCUCCgGACGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 171180 0.66 0.571914
Target:  5'- gGGUCCGcgggcuCCGGGGgCUGCGG-GCGGu -3'
miRNA:   3'- gUCGGGCc-----GGCUCCgGACGCUgCGCC- -5'
33616 3' -64.8 NC_007605.1 + 69750 0.66 0.571914
Target:  5'- aAG-UCGGaCCGAGGCCgGCGugG-GGu -3'
miRNA:   3'- gUCgGGCC-GGCUCCGGaCGCugCgCC- -5'
33616 3' -64.8 NC_007605.1 + 8879 0.66 0.562534
Target:  5'- gGGcCCCGGCCGuGuGCCUGaacACGCu- -3'
miRNA:   3'- gUC-GGGCCGGCuC-CGGACgc-UGCGcc -5'
33616 3' -64.8 NC_007605.1 + 158026 0.66 0.562534
Target:  5'- uGGCCCGGgUGgacagaGGGCCUGUccacCGUGGg -3'
miRNA:   3'- gUCGGGCCgGC------UCCGGACGcu--GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 154957 0.66 0.562534
Target:  5'- uGGCCCGGgUGgacagaGGGCCUGUccacCGUGGg -3'
miRNA:   3'- gUCGGGCCgGC------UCCGGACGcu--GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 145750 0.66 0.562534
Target:  5'- uGGCCCGGgUGgacagaGGGCCUGUccacCGUGGg -3'
miRNA:   3'- gUCGGGCCgGC------UCCGGACGcu--GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 142682 0.66 0.562534
Target:  5'- uGGCCCGGgUGgacagaGGGCCUGUccacCGUGGg -3'
miRNA:   3'- gUCGGGCCgGC------UCCGGACGcu--GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 139613 0.66 0.562534
Target:  5'- uGGCCCGGgUGgacagaGGGCCUGUccacCGUGGg -3'
miRNA:   3'- gUCGGGCCgGC------UCCGGACGcu--GCGCC- -5'
33616 3' -64.8 NC_007605.1 + 117910 0.66 0.562534
Target:  5'- gAGCCCuGGCCuuaGCUgGgGGCGCGGg -3'
miRNA:   3'- gUCGGG-CCGGcucCGGaCgCUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.