miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33616 5' -50.6 NC_007605.1 + 119051 0.66 0.997832
Target:  5'- cGGCCACuggcuCUGGUGAcGUuaaaUGUCCUGu- -3'
miRNA:   3'- -CCGGUGc----GACUAUUuCA----ACAGGACcc -5'
33616 5' -50.6 NC_007605.1 + 37971 0.66 0.997424
Target:  5'- aGGUCugGCaGGUGccugacgucuGAGaaaaaGUCCUGGGu -3'
miRNA:   3'- -CCGGugCGaCUAU----------UUCaa---CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 8601 0.66 0.997424
Target:  5'- cGGCCugGggaccCUGcaGGAGggGaCCUGGGa -3'
miRNA:   3'- -CCGGugC-----GACuaUUUCaaCaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 131667 0.66 0.997424
Target:  5'- uGGCCugGCg-----GG-UGUCUUGGGc -3'
miRNA:   3'- -CCGGugCGacuauuUCaACAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 140202 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 146340 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 158616 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 137133 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 149409 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 152478 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 155547 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 143271 0.66 0.996417
Target:  5'- gGGCCGCccggGCUGccGGGGUcccuccggcUGgCCUGGGa -3'
miRNA:   3'- -CCGGUG----CGACuaUUUCA---------ACaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 37270 0.66 0.996059
Target:  5'- aGCCcggggaaaagagaGCUGAUGGAGg---CCUGGGg -3'
miRNA:   3'- cCGGug-----------CGACUAUUUCaacaGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 56947 0.66 0.995804
Target:  5'- aGCCAccCGCUGuAUGAGGaagGggccucggCCUGGGg -3'
miRNA:   3'- cCGGU--GCGAC-UAUUUCaa-Ca-------GGACCC- -5'
33616 5' -50.6 NC_007605.1 + 101055 0.66 0.995671
Target:  5'- cGCCAacUGCagacggagacacGAUGAAGUUGaauUCCUGGGc -3'
miRNA:   3'- cCGGU--GCGa-----------CUAUUUCAAC---AGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 39100 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38975 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38851 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38476 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5'
33616 5' -50.6 NC_007605.1 + 38351 0.66 0.995604
Target:  5'- uGGCCcCGCUGGgcaccGcugcgccgccgccagGUCCUGGGg -3'
miRNA:   3'- -CCGGuGCGACUauuu-Caa-------------CAGGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.