miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33618 5' -55.1 NC_007605.1 + 117127 0.66 0.957598
Target:  5'- aCCG-CCAaagaaggagGAGGAGGGCgAGGagCGGAg -3'
miRNA:   3'- -GGCaGGUg--------UUUCUCCCGgUCCa-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 114560 0.66 0.957598
Target:  5'- cCCGUCCGauguGGuGGCCAGGU-GGAc -3'
miRNA:   3'- -GGCAGGUguuuCUcCCGGUCCAgUCU- -5'
33618 5' -55.1 NC_007605.1 + 91305 0.66 0.953785
Target:  5'- cUCGggggUUACugcGGGGGCCGGGUCAa- -3'
miRNA:   3'- -GGCa---GGUGuuuCUCCCGGUCCAGUcu -5'
33618 5' -55.1 NC_007605.1 + 163150 0.66 0.949746
Target:  5'- gCGUggaCACGuGGGGGGCCAGG-CuGGc -3'
miRNA:   3'- gGCAg--GUGUuUCUCCCGGUCCaGuCU- -5'
33618 5' -55.1 NC_007605.1 + 55786 0.66 0.94548
Target:  5'- gCGUgCCAaacugcGAGGGGGCCuGGUgcCAGAc -3'
miRNA:   3'- gGCA-GGUgu----UUCUCCCGGuCCA--GUCU- -5'
33618 5' -55.1 NC_007605.1 + 48411 0.66 0.940983
Target:  5'- gCCGUCuCugAGGGGGGGagaaagaCGGG-CGGGg -3'
miRNA:   3'- -GGCAG-GugUUUCUCCCg------GUCCaGUCU- -5'
33618 5' -55.1 NC_007605.1 + 4983 0.66 0.939118
Target:  5'- uCUGgCCACGGAGgaguucauGGGGCCAGGgacucugcccuggCAGGc -3'
miRNA:   3'- -GGCaGGUGUUUC--------UCCCGGUCCa------------GUCU- -5'
33618 5' -55.1 NC_007605.1 + 30067 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 71100 0.66 0.936252
Target:  5'- -gGUCUugGAu--GGGCUcuaGGGUCAGAg -3'
miRNA:   3'- ggCAGGugUUucuCCCGG---UCCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 14723 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 17792 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 20861 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 33136 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 26998 0.66 0.936252
Target:  5'- cCCaGUCCuacCAGAGGGGGCCAaGaaccCAGAc -3'
miRNA:   3'- -GG-CAGGu--GUUUCUCCCGGUcCa---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 56502 0.67 0.931287
Target:  5'- cCCGUcgggCCAUucguGAGuccAGGGCCcuGGUCAGGg -3'
miRNA:   3'- -GGCA----GGUGu---UUC---UCCCGGu-CCAGUCU- -5'
33618 5' -55.1 NC_007605.1 + 27620 0.67 0.931287
Target:  5'- uUGUCCaugggACAAGGcacaGGCCAGGUCAuGAc -3'
miRNA:   3'- gGCAGG-----UGUUUCuc--CCGGUCCAGU-CU- -5'
33618 5' -55.1 NC_007605.1 + 102123 0.67 0.920649
Target:  5'- aUCGccCCACAgagaAAGAGGGgCAGGUaucUAGAg -3'
miRNA:   3'- -GGCa-GGUGU----UUCUCCCgGUCCA---GUCU- -5'
33618 5' -55.1 NC_007605.1 + 106093 0.67 0.920649
Target:  5'- -gGUCCGCAAAGAcaucGGCCAGGcCc-- -3'
miRNA:   3'- ggCAGGUGUUUCUc---CCGGUCCaGucu -5'
33618 5' -55.1 NC_007605.1 + 45862 0.67 0.920649
Target:  5'- -gGUCUGCGGAGA-GGCguGGUaCAGAg -3'
miRNA:   3'- ggCAGGUGUUUCUcCCGguCCA-GUCU- -5'
33618 5' -55.1 NC_007605.1 + 54456 0.67 0.920649
Target:  5'- gCCGUCCugGcgcgaAAGAGGGCCccGGcCGc- -3'
miRNA:   3'- -GGCAGGugU-----UUCUCCCGGu-CCaGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.