miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33621 5' -62.3 NC_007605.1 + 63306 0.65 0.677705
Target:  5'- uGUAGCCGCcCGGGUCgaggcagguggGGGCCUg -3'
miRNA:   3'- gCGUCGGUGuGCCCGGaga--------CCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 115782 0.66 0.671877
Target:  5'- aGCAGCaaaCACGCGGcagacCCUCgUGaGACCCg -3'
miRNA:   3'- gCGUCG---GUGUGCCc----GGAG-AC-CUGGGa -5'
33621 5' -62.3 NC_007605.1 + 76777 0.66 0.671877
Target:  5'- aCGCAGgC-CACGGGCCgUUUGGcguCUCa -3'
miRNA:   3'- -GCGUCgGuGUGCCCGG-AGACCu--GGGa -5'
33621 5' -62.3 NC_007605.1 + 115675 0.66 0.670905
Target:  5'- gGCGGCCACguggaAgGGGUuguagagCUCUGGaagGCCCUc -3'
miRNA:   3'- gCGUCGGUG-----UgCCCG-------GAGACC---UGGGA- -5'
33621 5' -62.3 NC_007605.1 + 95145 0.66 0.66896
Target:  5'- aGCGGCCuccagguccaagcaGCACugcgGGGUCaCUGGAUCCUc -3'
miRNA:   3'- gCGUCGG--------------UGUG----CCCGGaGACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 45529 0.66 0.662142
Target:  5'- uCGCaggagGGCCACcagucucCGGGCCgggUCcGGGCCCg -3'
miRNA:   3'- -GCG-----UCGGUGu------GCCCGG---AGaCCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 50463 0.66 0.662142
Target:  5'- gGCAGCUGCAUcuugGGGCCUUUGuGCUUg -3'
miRNA:   3'- gCGUCGGUGUG----CCCGGAGACcUGGGa -5'
33621 5' -62.3 NC_007605.1 + 140038 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 152314 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 155383 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 166988 0.66 0.662142
Target:  5'- gCGCAGCgACugGcgcaacaccGUCUCUGGGCCg- -3'
miRNA:   3'- -GCGUCGgUGugCc--------CGGAGACCUGGga -5'
33621 5' -62.3 NC_007605.1 + 160747 0.66 0.662142
Target:  5'- uCGCcGCCcCAgGGGUCUCUaGACCUc -3'
miRNA:   3'- -GCGuCGGuGUgCCCGGAGAcCUGGGa -5'
33621 5' -62.3 NC_007605.1 + 136969 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 146176 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 143107 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 18547 0.66 0.662142
Target:  5'- aGCccGGCCACcauucuaagACccaaagugaggGGGCCUgagaCUGGACCCUa -3'
miRNA:   3'- gCG--UCGGUG---------UG-----------CCCGGA----GACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 158452 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 149245 0.66 0.662142
Target:  5'- --gGGCCACuCGGGUCUCggugGGGCUg- -3'
miRNA:   3'- gcgUCGGUGuGCCCGGAGa---CCUGGga -5'
33621 5' -62.3 NC_007605.1 + 34626 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5'
33621 5' -62.3 NC_007605.1 + 25419 0.66 0.652385
Target:  5'- uCGCGGag--AgGGGCCUCuuUGGGCCCUc -3'
miRNA:   3'- -GCGUCggugUgCCCGGAG--ACCUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.