miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33622 5' -58.3 NC_007605.1 + 153892 0.66 0.85922
Target:  5'- uGGCCCUcggggUUGAGGGgcgcccaggcguccgGGGaGGGGGCCAg -3'
miRNA:   3'- gCCGGGG-----AGUUUCUa--------------CCC-CCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 108823 0.66 0.858467
Target:  5'- --aCCCCUggCAGAGGUGGacGGGGGGCUc -3'
miRNA:   3'- gccGGGGA--GUUUCUACC--CCCCUUGGu -5'
33622 5' -58.3 NC_007605.1 + 44102 0.66 0.858467
Target:  5'- -uGUCCCUCuAGGAUauaGGGguuGGGGGCCAg -3'
miRNA:   3'- gcCGGGGAGuUUCUA---CCC---CCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 64689 0.66 0.858467
Target:  5'- gCGGCUCCagaUAGAGcGUGGGGGucaggugguGGGCCAg -3'
miRNA:   3'- -GCCGGGGa--GUUUC-UACCCCC---------CUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 25174 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 34381 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 28243 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 19036 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 22105 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 12899 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 101166 0.66 0.858467
Target:  5'- gCGGCCCCggcggUAGAG-UGGGGuacGcAGCCAg -3'
miRNA:   3'- -GCCGGGGa----GUUUCuACCCCc--C-UUGGU- -5'
33622 5' -58.3 NC_007605.1 + 143635 0.66 0.858467
Target:  5'- -cGCCCCUauauaccAGGUGGGuGGAGCUAg -3'
miRNA:   3'- gcCGGGGAguu----UCUACCCcCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 31312 0.66 0.858467
Target:  5'- uGaGCCCCguuaaaccCAAAGAaugucUGaGGGGAGCCAc -3'
miRNA:   3'- gC-CGGGGa-------GUUUCU-----ACcCCCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 40819 0.66 0.858467
Target:  5'- -cGCCCCUauauaccAGGUGGGuGGAGCUAg -3'
miRNA:   3'- gcCGGGGAguu----UCUACCCcCCUUGGU- -5'
33622 5' -58.3 NC_007605.1 + 120185 0.66 0.850838
Target:  5'- cCGGuuuCCCCcCAAGGGUGGGGcacGGACUg -3'
miRNA:   3'- -GCC---GGGGaGUUUCUACCCCc--CUUGGu -5'
33622 5' -58.3 NC_007605.1 + 47507 0.66 0.846169
Target:  5'- gGGgCCCUCGAGcuaugcuucuuuuguGGUacGGGGGGAgaACCu -3'
miRNA:   3'- gCCgGGGAGUUU---------------CUA--CCCCCCU--UGGu -5'
33622 5' -58.3 NC_007605.1 + 40145 0.66 0.843019
Target:  5'- cCGGUgcaCCUgGAAGGcagGGGGGGGGgCAg -3'
miRNA:   3'- -GCCGg--GGAgUUUCUa--CCCCCCUUgGU- -5'
33622 5' -58.3 NC_007605.1 + 100951 0.66 0.835016
Target:  5'- aCGGCCCgUCAaaacAAGGUGGuGGaGACCc -3'
miRNA:   3'- -GCCGGGgAGU----UUCUACCcCCcUUGGu -5'
33622 5' -58.3 NC_007605.1 + 152357 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5'
33622 5' -58.3 NC_007605.1 + 146219 0.66 0.826837
Target:  5'- aGGCCCCUCuccgcgagGGAGAggcucgggccUGGaGGGGAggagaggggacGCCu -3'
miRNA:   3'- gCCGGGGAG--------UUUCU----------ACC-CCCCU-----------UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.