miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 5' -67.6 NC_007605.1 + 113574 0.86 0.01852
Target:  5'- cGGCCccggCCUCCGCGGCCCCggccuCCAGCCCu -3'
miRNA:   3'- -CCGGaa--GGGGGCGCCGGGG-----GGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 1895 0.73 0.149978
Target:  5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3'
miRNA:   3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5'
33629 5' -67.6 NC_007605.1 + 113484 0.73 0.157158
Target:  5'- cGGCCccggCCUCUGCGGCCCC--GGCCUc -3'
miRNA:   3'- -CCGGaa--GGGGGCGCCGGGGggUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 75004 0.66 0.46856
Target:  5'- uGGCuCUUucacguccucuaCCCCgGCGGCCuCcacuaccuccucgacCCCGGCCUc -3'
miRNA:   3'- -CCG-GAA------------GGGGgCGCCGG-G---------------GGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 1981 0.76 0.105012
Target:  5'- uGGCUgcgCCCgCGCGcGCCCCCCGaCCCc -3'
miRNA:   3'- -CCGGaa-GGGgGCGC-CGGGGGGUcGGG- -5'
33629 5' -67.6 NC_007605.1 + 539 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5'
33629 5' -67.6 NC_007605.1 + 1599 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5'
33629 5' -67.6 NC_007605.1 + 2136 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5'
33629 5' -67.6 NC_007605.1 + 921 0.74 0.139768
Target:  5'- uGGCUgcgCCCgCGCGGCgCCCCCcGaCCCc -3'
miRNA:   3'- -CCGGaa-GGGgGCGCCG-GGGGGuC-GGG- -5'
33629 5' -67.6 NC_007605.1 + 1357 0.73 0.149978
Target:  5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3'
miRNA:   3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5'
33629 5' -67.6 NC_007605.1 + 97378 0.74 0.139768
Target:  5'- aGGCCUUCCCCuuccugCGCGGCCUCacgCC-GCUCa -3'
miRNA:   3'- -CCGGAAGGGG------GCGCCGGGG---GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 383 0.74 0.139768
Target:  5'- uGGCUgcgCCCgCGCGGCgCCCCCcGaCCCc -3'
miRNA:   3'- -CCGGaa-GGGgGCGCCG-GGGGGuC-GGG- -5'
33629 5' -67.6 NC_007605.1 + 113514 0.8 0.052833
Target:  5'- cGGCCccggCCUCCGCGGCCccggccuccgcggCCCCGGCCUc -3'
miRNA:   3'- -CCGGaa--GGGGGCGCCGG-------------GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 297 0.73 0.149978
Target:  5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3'
miRNA:   3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5'
33629 5' -67.6 NC_007605.1 + 973 0.78 0.072951
Target:  5'- cGCCaUCCaccgCCCGCaGCCCCCgGGCCCg -3'
miRNA:   3'- cCGGaAGG----GGGCGcCGGGGGgUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 28153 0.74 0.136509
Target:  5'- cGCCUaCCCCaaaucuCGCGGgCCUCUAGCCCc -3'
miRNA:   3'- cCGGAaGGGG------GCGCCgGGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 835 0.73 0.149978
Target:  5'- cGGCgUgcaggCUCCCGCGccGCCCCCCGcucccGCCCc -3'
miRNA:   3'- -CCGgAa----GGGGGCGC--CGGGGGGU-----CGGG- -5'
33629 5' -67.6 NC_007605.1 + 117784 0.73 0.157158
Target:  5'- aGGCUc-CCCUCGaGGCCgCCCUGGCCCg -3'
miRNA:   3'- -CCGGaaGGGGGCgCCGG-GGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 165490 0.77 0.078504
Target:  5'- uGGCCagcUgCCCCGUGGCCCacaCCuGCCCa -3'
miRNA:   3'- -CCGGa--AgGGGGCGCCGGGg--GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 1076 0.76 0.106027
Target:  5'- aGGCCacgcccccuccacuuUUUCCaggaaugCGCGGCCCCCCAuGCCCc -3'
miRNA:   3'- -CCGG---------------AAGGGg------GCGCCGGGGGGU-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.