miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3520 5' -46.6 NC_001623.1 + 34117 0.66 0.999867
Target:  5'- gGCCGGCc-CAACGGCGGCGUgcuugccgacgacauGGgacucGGCa -3'
miRNA:   3'- -UGGUUGuuGUUGUUGUCGUA---------------UCa----CCG- -5'
3520 5' -46.6 NC_001623.1 + 66292 0.66 0.999867
Target:  5'- cGCCA--AACAACu-CAGUcuggccguccaguacAUGGUGGCg -3'
miRNA:   3'- -UGGUugUUGUUGuuGUCG---------------UAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 65963 0.66 0.999852
Target:  5'- uGCCAACAuauuCAAUuacAUGGCcgAGcUGGCg -3'
miRNA:   3'- -UGGUUGUu---GUUGu--UGUCGuaUC-ACCG- -5'
3520 5' -46.6 NC_001623.1 + 36027 0.66 0.999808
Target:  5'- cACCGACuGCGACGaaACGGUAaacGUGGa -3'
miRNA:   3'- -UGGUUGuUGUUGU--UGUCGUau-CACCg -5'
3520 5' -46.6 NC_001623.1 + 66733 0.66 0.999808
Target:  5'- cACgAGCcGCAGCAACAGCAcaaacucGGUaGCg -3'
miRNA:   3'- -UGgUUGuUGUUGUUGUCGUa------UCAcCG- -5'
3520 5' -46.6 NC_001623.1 + 67419 0.66 0.999752
Target:  5'- cAUCGAUAGCGGCGGCGGa--GGcGGCc -3'
miRNA:   3'- -UGGUUGUUGUUGUUGUCguaUCaCCG- -5'
3520 5' -46.6 NC_001623.1 + 65587 0.66 0.999682
Target:  5'- aGCC-GCGGCAAUAAUcGCGU--UGGCg -3'
miRNA:   3'- -UGGuUGUUGUUGUUGuCGUAucACCG- -5'
3520 5' -46.6 NC_001623.1 + 42338 0.66 0.999682
Target:  5'- aAUCAACAggACAACAGCAGCAa------ -3'
miRNA:   3'- -UGGUUGU--UGUUGUUGUCGUaucaccg -5'
3520 5' -46.6 NC_001623.1 + 55820 0.67 0.99949
Target:  5'- cGCCGACGcccGCGACGuucgauucugGCGGCuGUGuUGGCg -3'
miRNA:   3'- -UGGUUGU---UGUUGU----------UGUCG-UAUcACCG- -5'
3520 5' -46.6 NC_001623.1 + 80026 0.67 0.999454
Target:  5'- aACaAACAAUuaaacguaaagcugAAUAACGGCcgGGUGGCc -3'
miRNA:   3'- -UGgUUGUUG--------------UUGUUGUCGuaUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 3816 0.67 0.999374
Target:  5'- uGCCAGCAAacggacagagcuuguCGACAguuuucauuuuuugGCAGUuUGGUGGUu -3'
miRNA:   3'- -UGGUUGUU---------------GUUGU--------------UGUCGuAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 30614 0.67 0.99936
Target:  5'- cCCGGCAACAACuucACGGUGUAcGUguuggguuuGGCg -3'
miRNA:   3'- uGGUUGUUGUUGu--UGUCGUAU-CA---------CCG- -5'
3520 5' -46.6 NC_001623.1 + 22160 0.67 0.999203
Target:  5'- gACCAGCAGCuggugccguACAACAGC-----GGCg -3'
miRNA:   3'- -UGGUUGUUGu--------UGUUGUCGuaucaCCG- -5'
3520 5' -46.6 NC_001623.1 + 130060 0.67 0.999203
Target:  5'- uGCCGucgucaauACAACAcgGCAGCGGCGUcauGuUGGUa -3'
miRNA:   3'- -UGGU--------UGUUGU--UGUUGUCGUAu--C-ACCG- -5'
3520 5' -46.6 NC_001623.1 + 18063 0.67 0.999186
Target:  5'- uCCAGCAACucgucccAGCuGCGGCGaaacguguUAGUGGUc -3'
miRNA:   3'- uGGUUGUUG-------UUGuUGUCGU--------AUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 18580 0.67 0.999014
Target:  5'- uAUCGACGACGAguACAGUugucgGGCg -3'
miRNA:   3'- -UGGUUGUUGUUguUGUCGuaucaCCG- -5'
3520 5' -46.6 NC_001623.1 + 5961 0.67 0.999014
Target:  5'- aGCCGAC-ACAAUuaauaGGCGUcguGUGGCu -3'
miRNA:   3'- -UGGUUGuUGUUGuug--UCGUAu--CACCG- -5'
3520 5' -46.6 NC_001623.1 + 63959 0.67 0.999014
Target:  5'- -aCGACGACGACGcGCAGCAUAaucGCa -3'
miRNA:   3'- ugGUUGUUGUUGU-UGUCGUAUcacCG- -5'
3520 5' -46.6 NC_001623.1 + 19193 0.68 0.998788
Target:  5'- cUCAACGACAaauuggacgacGCAGCAGCuu--UGGCc -3'
miRNA:   3'- uGGUUGUUGU-----------UGUUGUCGuaucACCG- -5'
3520 5' -46.6 NC_001623.1 + 8560 0.68 0.998519
Target:  5'- cCUAAUAACGACGuuguCGG-AUGGUGGUa -3'
miRNA:   3'- uGGUUGUUGUUGUu---GUCgUAUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.