miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3527 3' -45.7 NC_001623.1 + 23308 0.66 0.999986
Target:  5'- cCAAcGCGACG-CCGUgcuuAUGccGUGUCGGCa -3'
miRNA:   3'- cGUU-UGCUGCuGGCG----UAU--UAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 110387 0.66 0.999986
Target:  5'- cGCAGGCGgguugGCGGCCGCAUc--GUUG-Cu -3'
miRNA:   3'- -CGUUUGC-----UGCUGGCGUAuuaUAGCuG- -5'
3527 3' -45.7 NC_001623.1 + 124263 0.66 0.999981
Target:  5'- ---uGCGGCGGuaGUAUAuuauUAUCGACa -3'
miRNA:   3'- cguuUGCUGCUggCGUAUu---AUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 124745 0.66 0.999974
Target:  5'- --uGACGGCGACgUGUAUGuUGUUGAUa -3'
miRNA:   3'- cguUUGCUGCUG-GCGUAUuAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 73012 0.66 0.999973
Target:  5'- -gAGACGACGugCGCGUuaaguUGUuuuuaaaCGGCg -3'
miRNA:   3'- cgUUUGCUGCugGCGUAuu---AUA-------GCUG- -5'
3527 3' -45.7 NC_001623.1 + 35781 0.66 0.999964
Target:  5'- cGCuguACGAcuCGACCGUcg---AUCGACa -3'
miRNA:   3'- -CGuu-UGCU--GCUGGCGuauuaUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 65693 0.66 0.999964
Target:  5'- -gAAAgGGCGcACUGCAUAAUcauggCGACg -3'
miRNA:   3'- cgUUUgCUGC-UGGCGUAUUAua---GCUG- -5'
3527 3' -45.7 NC_001623.1 + 45622 0.66 0.999952
Target:  5'- --uAGCG--GACCGCAUGuAUGUCGAUu -3'
miRNA:   3'- cguUUGCugCUGGCGUAU-UAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 123155 0.66 0.999952
Target:  5'- gGCAGACGGuCGGguuUgGCA--AUGUCGGCa -3'
miRNA:   3'- -CGUUUGCU-GCU---GgCGUauUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 2147 0.66 0.999952
Target:  5'- cGCAGACGGCG-CCG----GUcUCGGCg -3'
miRNA:   3'- -CGUUUGCUGCuGGCguauUAuAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 65716 0.66 0.999952
Target:  5'- gGCcGGCGAauUGACCGCGUuggcggcCGACg -3'
miRNA:   3'- -CGuUUGCU--GCUGGCGUAuuaua--GCUG- -5'
3527 3' -45.7 NC_001623.1 + 11724 0.67 0.999935
Target:  5'- cGCAAACaguuugggcuuGACGACCGUAacGUugUGACa -3'
miRNA:   3'- -CGUUUG-----------CUGCUGGCGUauUAuaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 131899 0.67 0.999914
Target:  5'- aGCcuguGGCGGCGGCUGCugcugggAGUggCGGCg -3'
miRNA:   3'- -CGu---UUGCUGCUGGCGua-----UUAuaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 111642 0.67 0.999914
Target:  5'- aGUAGGCGGCGGCgGCGg-----UGGCa -3'
miRNA:   3'- -CGUUUGCUGCUGgCGUauuauaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 2540 0.67 0.999886
Target:  5'- cGCGuGCGGCacGCCGC-UGGUcAUCGACc -3'
miRNA:   3'- -CGUuUGCUGc-UGGCGuAUUA-UAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 18550 0.67 0.999851
Target:  5'- uGCuAGgGACGugCGCGcUAAuaauuuuguUAUCGACg -3'
miRNA:   3'- -CGuUUgCUGCugGCGU-AUU---------AUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 94524 0.67 0.999851
Target:  5'- gGCGaguUGugGGCuUGgAUGAUGUCGACg -3'
miRNA:   3'- -CGUuu-GCugCUG-GCgUAUUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 108763 0.67 0.999851
Target:  5'- -aAGugGGCGGCCGCuucuugcucGGUGcUCGACu -3'
miRNA:   3'- cgUUugCUGCUGGCGua-------UUAU-AGCUG- -5'
3527 3' -45.7 NC_001623.1 + 69761 0.68 0.999807
Target:  5'- uCAAACGACcgacGCCGUAUGGUAcagCGAa -3'
miRNA:   3'- cGUUUGCUGc---UGGCGUAUUAUa--GCUg -5'
3527 3' -45.7 NC_001623.1 + 30739 0.68 0.999807
Target:  5'- gGC-AAUGACuACCGUAUAAUGUuaaaaccgCGACg -3'
miRNA:   3'- -CGuUUGCUGcUGGCGUAUUAUA--------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.