miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 8589 0.99 0.00092
Target:  5'- uACCAGAACCUA-CCGCGCGCGGCGCCg -3'
miRNA:   3'- -UGGUCUUGGAUgGGCGCGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15798 0.79 0.034218
Target:  5'- cACCGGAGCacccccGCCaUGCGCGCGGCGCg -3'
miRNA:   3'- -UGGUCUUGga----UGG-GCGCGCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 12276 0.78 0.038427
Target:  5'- gGCCAGGACCUuCUCGUGCGUGGgGUUg -3'
miRNA:   3'- -UGGUCUUGGAuGGGCGCGCGCCgCGG- -5'
355 5' -61.3 AC_000011.1 + 16624 0.77 0.051288
Target:  5'- cGCUuGAACC--CCCG-GCGCGGCGCCg -3'
miRNA:   3'- -UGGuCUUGGauGGGCgCGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15959 0.77 0.047043
Target:  5'- uCCGGGuCCUGCCgGCGC-UGGCGCCu -3'
miRNA:   3'- uGGUCUuGGAUGGgCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 2976 0.76 0.054323
Target:  5'- uACCAGAugCUgACCUGCGCGgCGGgaacaGCCa -3'
miRNA:   3'- -UGGUCUugGA-UGGGCGCGC-GCCg----CGG- -5'
355 5' -61.3 AC_000011.1 + 11297 0.76 0.057532
Target:  5'- gACCAGGuugGCCgcgGCCaCGUGCGCGcGCGCg -3'
miRNA:   3'- -UGGUCU---UGGa--UGG-GCGCGCGC-CGCGg -5'
355 5' -61.3 AC_000011.1 + 18066 0.74 0.07873
Target:  5'- cGCCGGuGGCCgugGCCCGCGCGCGaC-CCg -3'
miRNA:   3'- -UGGUC-UUGGa--UGGGCGCGCGCcGcGG- -5'
355 5' -61.3 AC_000011.1 + 26723 0.73 0.093263
Target:  5'- cUCAGGuguCCaGCUgGCGgGCGGCGCCa -3'
miRNA:   3'- uGGUCUu--GGaUGGgCGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15750 0.71 0.149357
Target:  5'- cGCCGGuAC--GCCCGCGCcaagagccggcgGCGGCGCa -3'
miRNA:   3'- -UGGUCuUGgaUGGGCGCG------------CGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 24677 0.71 0.141427
Target:  5'- cGCCGG-GCCUcCCCGCGCaggGUGGUGUg -3'
miRNA:   3'- -UGGUCuUGGAuGGGCGCG---CGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 16353 0.7 0.153472
Target:  5'- cACCGGuugcACCUuccGCCCGCGCcacuGCacGCGCCg -3'
miRNA:   3'- -UGGUCu---UGGA---UGGGCGCG----CGc-CGCGG- -5'
355 5' -61.3 AC_000011.1 + 3763 0.7 0.162012
Target:  5'- aGCCGGcGCCcauggccauUCCGCGCaCGGCGCUg -3'
miRNA:   3'- -UGGUCuUGGau-------GGGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 5210 0.7 0.162012
Target:  5'- gACCGGAcCCUGgCUGCGC-UGGaCGCCc -3'
miRNA:   3'- -UGGUCUuGGAUgGGCGCGcGCC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 12023 0.7 0.170978
Target:  5'- aGCCAccuCCUGauCCCGCGaugcggGCGGCGCUg -3'
miRNA:   3'- -UGGUcuuGGAU--GGGCGCg-----CGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16548 0.7 0.162012
Target:  5'- -gCAGGugCUGCcgaCCGCgGCGCcGCGCCg -3'
miRNA:   3'- ugGUCUugGAUG---GGCG-CGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11213 0.7 0.162012
Target:  5'- gACgGGGAUCaGCCC-CGCGCGcGCGCa -3'
miRNA:   3'- -UGgUCUUGGaUGGGcGCGCGC-CGCGg -5'
355 5' -61.3 AC_000011.1 + 11014 0.7 0.15769
Target:  5'- cGCCGGAGCggcACCCGCGCGUgcagaugaaaagGGaCGCUc -3'
miRNA:   3'- -UGGUCUUGga-UGGGCGCGCG------------CC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 21383 0.7 0.153472
Target:  5'- uACgAGGGCCUGCUgCGC-CGCaGCGCCc -3'
miRNA:   3'- -UGgUCUUGGAUGG-GCGcGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16009 0.7 0.175625
Target:  5'- cACCGGugugcGCgUGCCCGUGCGCaccCGCCc -3'
miRNA:   3'- -UGGUCu----UGgAUGGGCGCGCGcc-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.