miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 30918 0.67 0.280121
Target:  5'- cCCAGuACCgcgACCagcgaGgGCGCGGCuGCUc -3'
miRNA:   3'- uGGUCuUGGa--UGGg----CgCGCGCCG-CGG- -5'
355 5' -61.3 AC_000011.1 + 28399 0.66 0.324568
Target:  5'- uCCAucGCUUacaGCCUGUGCaCGGCGCUa -3'
miRNA:   3'- uGGUcuUGGA---UGGGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 26723 0.73 0.093263
Target:  5'- cUCAGGuguCCaGCUgGCGgGCGGCGCCa -3'
miRNA:   3'- uGGUCUu--GGaUGGgCGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 26458 0.67 0.266419
Target:  5'- cCCAGAuggGCCUGgCCGC---CGGUGCCg -3'
miRNA:   3'- uGGUCU---UGGAUgGGCGcgcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 24926 0.69 0.211397
Target:  5'- uCCGGAAuCCUGCCCGCcaccugcucGCGCuGC-CCu -3'
miRNA:   3'- uGGUCUU-GGAUGGGCG---------CGCGcCGcGG- -5'
355 5' -61.3 AC_000011.1 + 24677 0.71 0.141427
Target:  5'- cGCCGG-GCCUcCCCGCGCaggGUGGUGUg -3'
miRNA:   3'- -UGGUCuUGGAuGGGCGCG---CGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 24248 0.69 0.180385
Target:  5'- gACCAGGugCUcauCaaGCGCGCGuCGCCc -3'
miRNA:   3'- -UGGUCUugGAu--GggCGCGCGCcGCGG- -5'
355 5' -61.3 AC_000011.1 + 23792 0.66 0.301714
Target:  5'- cGCCuacgaguuGAACCUcuucuCgCCGCGCGUGccccccaaGCGCCa -3'
miRNA:   3'- -UGGu-------CUUGGAu----G-GGCGCGCGC--------CGCGG- -5'
355 5' -61.3 AC_000011.1 + 23611 0.67 0.287179
Target:  5'- uGCCAGcuCCUcCUCGUGCuccGCGgGCGUCa -3'
miRNA:   3'- -UGGUCuuGGAuGGGCGCG---CGC-CGCGG- -5'
355 5' -61.3 AC_000011.1 + 22483 0.68 0.240648
Target:  5'- cCCAGAACC-GCUgggggCGCaGCGUGGUGCa -3'
miRNA:   3'- uGGUCUUGGaUGG-----GCG-CGCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 21911 0.68 0.241267
Target:  5'- uACCAGuuccgcaacgugucCCUGCCCGCGgGCcaUGCCg -3'
miRNA:   3'- -UGGUCuu------------GGAUGGGCGCgCGccGCGG- -5'
355 5' -61.3 AC_000011.1 + 21383 0.7 0.153472
Target:  5'- uACgAGGGCCUGCUgCGC-CGCaGCGCCc -3'
miRNA:   3'- -UGgUCUUGGAUGG-GCGcGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 18174 0.66 0.321448
Target:  5'- uUCAGAguGCuCUGCCaguucgcaugaggGCGgGCGGUGCCc -3'
miRNA:   3'- uGGUCU--UG-GAUGGg------------CGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 18066 0.74 0.07873
Target:  5'- cGCCGGuGGCCgugGCCCGCGCGCGaC-CCg -3'
miRNA:   3'- -UGGUC-UUGGa--UGGGCGCGCGCcGcGG- -5'
355 5' -61.3 AC_000011.1 + 17243 0.69 0.211397
Target:  5'- cGCCAccACC-ACCgGCG-GCGGCGCg -3'
miRNA:   3'- -UGGUcuUGGaUGGgCGCgCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 17080 0.69 0.195353
Target:  5'- cACCucuGAcCCUG-CCGCGCGC-GCGCUa -3'
miRNA:   3'- -UGGu--CUuGGAUgGGCGCGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16624 0.77 0.051288
Target:  5'- cGCUuGAACC--CCCG-GCGCGGCGCCg -3'
miRNA:   3'- -UGGuCUUGGauGGGCgCGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16548 0.7 0.162012
Target:  5'- -gCAGGugCUGCcgaCCGCgGCGCcGCGCCg -3'
miRNA:   3'- ugGUCUugGAUG---GGCG-CGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16402 0.67 0.273201
Target:  5'- uGCCGGAGCgCU-CgCCGgGCGUgaagaccacgguGGUGCCg -3'
miRNA:   3'- -UGGUCUUG-GAuG-GGCgCGCG------------CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 16353 0.7 0.153472
Target:  5'- cACCGGuugcACCUuccGCCCGCGCcacuGCacGCGCCg -3'
miRNA:   3'- -UGGUCu---UGGA---UGGGCGCG----CGc-CGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.