miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 18121 0.66 0.96461
Target:  5'- aUGCCUcccucGGCGGugGgggUggUGuGGGgGGCa -3'
miRNA:   3'- -ACGGA-----CCGUCugUa--AuuGC-CUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 46626 0.66 0.96461
Target:  5'- ----aGGCGGGCGgggugaGAUGGAGCGGa -3'
miRNA:   3'- acggaCCGUCUGUaa----UUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 17419 0.66 0.96461
Target:  5'- -cCCUGGCGGcCAUcuuu-GAGCGGCc -3'
miRNA:   3'- acGGACCGUCuGUAauugcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 184126 0.66 0.96461
Target:  5'- -cCCUGGCGGcCAUcuuu-GAGCGGCc -3'
miRNA:   3'- acGGACCGUCuGUAauugcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 74181 0.66 0.961195
Target:  5'- gUGgCUGGCAGAaaggGugGGAaaGGCc -3'
miRNA:   3'- -ACgGACCGUCUguaaUugCCUcgCCG- -5'
3575 5' -54.4 NC_001650.1 + 22753 0.66 0.961195
Target:  5'- gGCUUGGgGGAgAUgauggaGGCGcGGGUGGCc -3'
miRNA:   3'- aCGGACCgUCUgUAa-----UUGC-CUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 42606 0.66 0.961195
Target:  5'- -uUCUGGCAGAgAacucugccACGGGGgGGCu -3'
miRNA:   3'- acGGACCGUCUgUaau-----UGCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 5322 0.66 0.961195
Target:  5'- gGCUguggGGCGGccACGUgGugGGgaGGCGGCc -3'
miRNA:   3'- aCGGa---CCGUC--UGUAaUugCC--UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 172029 0.66 0.961195
Target:  5'- gGCUguggGGCGGccACGUgGugGGgaGGCGGCc -3'
miRNA:   3'- aCGGa---CCGUC--UGUAaUugCC--UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 71668 0.66 0.961195
Target:  5'- aGCCU-GUGGGCGUucUGugGGGG-GGCu -3'
miRNA:   3'- aCGGAcCGUCUGUA--AUugCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 27463 0.66 0.960128
Target:  5'- -aCCUGGCccggguccagaagcAGGCcuccaacCGGGGCGGCg -3'
miRNA:   3'- acGGACCG--------------UCUGuaauu--GCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 129135 0.66 0.957559
Target:  5'- cGCCcggGGCcgaGGACAcg---GGGGCGGCc -3'
miRNA:   3'- aCGGa--CCG---UCUGUaauugCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 24605 0.66 0.957559
Target:  5'- gGaCCUGGCGcACGUgcucACGGAcgagguguGCGGCc -3'
miRNA:   3'- aC-GGACCGUcUGUAau--UGCCU--------CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 60340 0.66 0.957559
Target:  5'- gGcCCUGG-AGACc---GCGGAcGCGGCc -3'
miRNA:   3'- aC-GGACCgUCUGuaauUGCCU-CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 129268 0.66 0.957559
Target:  5'- aGCCUGGCGGGg--UcGCGc-GCGGCc -3'
miRNA:   3'- aCGGACCGUCUguaAuUGCcuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 113820 0.66 0.957559
Target:  5'- aUGaCCgcGGCGGGCGUguacACGGAcGUGGUc -3'
miRNA:   3'- -AC-GGa-CCGUCUGUAau--UGCCU-CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 138898 0.66 0.953697
Target:  5'- gGCCaugcUGGCAGACAggGGCcauGCuGGCa -3'
miRNA:   3'- aCGG----ACCGUCUGUaaUUGccuCG-CCG- -5'
3575 5' -54.4 NC_001650.1 + 138974 0.66 0.953697
Target:  5'- gGCCaugcUGGCAGACAggGGCcauGCuGGCa -3'
miRNA:   3'- aCGG----ACCGUCUGUaaUUGccuCG-CCG- -5'
3575 5' -54.4 NC_001650.1 + 79091 0.66 0.953697
Target:  5'- gGCCUGGCuccGGGCGcggccgcucGGCGG-GCGGg -3'
miRNA:   3'- aCGGACCG---UCUGUaa-------UUGCCuCGCCg -5'
3575 5' -54.4 NC_001650.1 + 133140 0.66 0.953697
Target:  5'- cGCCgcgGGgGGACccu--CGG-GCGGCu -3'
miRNA:   3'- aCGGa--CCgUCUGuaauuGCCuCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.