miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 169186 0.67 0.930869
Target:  5'- uUGCCgGGCAGGguuCAgUGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUCU---GUaAUugCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 168613 0.67 0.940714
Target:  5'- uUGCCaGGCAGGguUUAGaguggggGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUguAAUUg------CCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 168317 0.7 0.843965
Target:  5'- uUGCCgGGCAGaACAUgucaGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUC-UGUAa---UugCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 168130 0.71 0.754545
Target:  5'- uUGCCaGGCAGAUuagGUUAAUGuGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUG---UAAUUGC-CUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 167752 0.72 0.725183
Target:  5'- uUGCCaGGCAGACcccggGGgGGuGCGGUa -3'
miRNA:   3'- -ACGGaCCGUCUGuaa--UUgCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 164848 0.68 0.895565
Target:  5'- aGCCcGGguGccgcGCGgcc-CGGGGCGGCg -3'
miRNA:   3'- aCGGaCCguC----UGUaauuGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 164408 0.71 0.754545
Target:  5'- aGCCUGaG-AGACAggcGCGGGGCGuGCu -3'
miRNA:   3'- aCGGAC-CgUCUGUaauUGCCUCGC-CG- -5'
3575 5' -54.4 NC_001650.1 + 163299 0.69 0.85197
Target:  5'- gGCCaUGGUGGACAcccuccucacGGCGGccccGGCGGCg -3'
miRNA:   3'- aCGG-ACCGUCUGUaa--------UUGCC----UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 158281 0.69 0.867369
Target:  5'- aUGCCcaggGGCAuGGCGUUGucgggcCGGGGCaGCa -3'
miRNA:   3'- -ACGGa---CCGU-CUGUAAUu-----GCCUCGcCG- -5'
3575 5' -54.4 NC_001650.1 + 156402 0.67 0.935911
Target:  5'- gGcCCUGGcCGGGCAgu-GCGGGGUGa- -3'
miRNA:   3'- aC-GGACC-GUCUGUaauUGCCUCGCcg -5'
3575 5' -54.4 NC_001650.1 + 149763 0.68 0.888854
Target:  5'- gGCCUGGgGGAUAagcaucCGG-GCGGUa -3'
miRNA:   3'- aCGGACCgUCUGUaauu--GCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 148907 0.66 0.949604
Target:  5'- aGCCgucacagucuuUGGCaAGAacCAUcgcUAugGGGGCGGUa -3'
miRNA:   3'- aCGG-----------ACCG-UCU--GUA---AUugCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 148821 0.68 0.92006
Target:  5'- cGCCUGGgGGAgGgUggUGGGGgGuGCa -3'
miRNA:   3'- aCGGACCgUCUgUaAuuGCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 145748 0.69 0.874751
Target:  5'- gGCCaUGGCGGGCAgguccgcCGGguuccaGGCGGUg -3'
miRNA:   3'- aCGG-ACCGUCUGUaauu---GCC------UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 143102 0.69 0.859773
Target:  5'- cGCC-GGCuGcACGggc-CGGGGCGGCg -3'
miRNA:   3'- aCGGaCCGuC-UGUaauuGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 142692 0.69 0.867369
Target:  5'- cGCC-GGCcGAUA--AGCGGcgAGCGGCg -3'
miRNA:   3'- aCGGaCCGuCUGUaaUUGCC--UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 142636 0.67 0.945277
Target:  5'- gGCC-GGCGGAgGgggcuGCGGcugcuGCGGCc -3'
miRNA:   3'- aCGGaCCGUCUgUaau--UGCCu----CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 138974 0.66 0.953697
Target:  5'- gGCCaugcUGGCAGACAggGGCcauGCuGGCa -3'
miRNA:   3'- aCGG----ACCGUCUGUaaUUGccuCG-CCG- -5'
3575 5' -54.4 NC_001650.1 + 138936 0.66 0.953697
Target:  5'- gGCCaugcUGGCAGACAggGGCcauGCuGGCa -3'
miRNA:   3'- aCGG----ACCGUCUGUaaUUGccuCG-CCG- -5'
3575 5' -54.4 NC_001650.1 + 138898 0.66 0.953697
Target:  5'- gGCCaugcUGGCAGACAggGGCcauGCuGGCa -3'
miRNA:   3'- aCGG----ACCGUCUGUaaUUGccuCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.