miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 2622 0.71 0.792126
Target:  5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 169329 0.71 0.792126
Target:  5'- uUGCCgGGCAGAUuu--AgGGAGUGGg -3'
miRNA:   3'- -ACGGaCCGUCUGuaauUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 69158 0.72 0.695092
Target:  5'- gGCCgGGCAGGgugguagcCAgggAGgGGGGCGGCg -3'
miRNA:   3'- aCGGaCCGUCU--------GUaa-UUgCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 3928 0.85 0.171133
Target:  5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 6328 0.69 0.867369
Target:  5'- uUGCUaGGCAGAauaaGgaAAUGGGGCGGg -3'
miRNA:   3'- -ACGGaCCGUCUg---UaaUUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 61482 0.7 0.843965
Target:  5'- gGuCCUGGCGGACcucgcgcGGCuGGAGCaGGCc -3'
miRNA:   3'- aC-GGACCGUCUGuaa----UUG-CCUCG-CCG- -5'
3575 5' -54.4 NC_001650.1 + 172074 0.71 0.773591
Target:  5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3'
miRNA:   3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 170635 0.85 0.171133
Target:  5'- gUGCCUGGCAGGCAUUuagAACauGGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAA---UUGccUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 168317 0.7 0.843965
Target:  5'- uUGCCgGGCAGaACAUgucaGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUC-UGUAa---UugCCUCgC-CG- -5'
3575 5' -54.4 NC_001650.1 + 4137 1.13 0.002531
Target:  5'- aUGCCUGGCAGACAUUAACGGAGCGGCg -3'
miRNA:   3'- -ACGGACCGUCUGUAAUUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 5367 0.71 0.773591
Target:  5'- uUGCUaGGCAGAUua-GGC-GAGCGGCg -3'
miRNA:   3'- -ACGGaCCGUCUGuaaUUGcCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 117799 0.7 0.806538
Target:  5'- gGgCUGGCGGACGUguucgccaagcuGgGGAGgGGCu -3'
miRNA:   3'- aCgGACCGUCUGUAau----------UgCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 168130 0.71 0.754545
Target:  5'- uUGCCaGGCAGAUuagGUUAAUGuGGGgGGUg -3'
miRNA:   3'- -ACGGaCCGUCUG---UAAUUGC-CUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 69070 0.72 0.705187
Target:  5'- gUGUCUGGCGGcCAUgggccCGGGcgcGCGGCa -3'
miRNA:   3'- -ACGGACCGUCuGUAauu--GCCU---CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 136732 0.73 0.67475
Target:  5'- cGuCUUGGCGGugGgg-GCGGuGGCGGCg -3'
miRNA:   3'- aC-GGACCGUCugUaauUGCC-UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 174596 0.82 0.254398
Target:  5'- uUGCCUGGCAGAC--UAAgGGGGUGGg -3'
miRNA:   3'- -ACGGACCGUCUGuaAUUgCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 3156 0.69 0.874751
Target:  5'- uUGCUaGGCAgGAUAggAGgGGAGgGGCu -3'
miRNA:   3'- -ACGGaCCGU-CUGUaaUUgCCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 183448 0.69 0.874751
Target:  5'- gGCCaucuuggugGGguGGCAUcuUggUGGGGUGGCc -3'
miRNA:   3'- aCGGa--------CCguCUGUA--AuuGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 77168 0.69 0.867369
Target:  5'- gGCCUcgGGCacGGGCAUg---GGGGCGGUg -3'
miRNA:   3'- aCGGA--CCG--UCUGUAauugCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 1610 0.7 0.843965
Target:  5'- uUGCCgGGCAGaACAUgucaGugGGGGgGuGCa -3'
miRNA:   3'- -ACGGaCCGUC-UGUAa---UugCCUCgC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.