miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3577 5' -53.1 NC_001650.1 + 122341 0.66 0.986393
Target:  5'- ---cGCCgcccccGCCCCCgAgccGACCCCg -3'
miRNA:   3'- guaaUGGauuc--UGGGGGgUa--CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 36699 0.66 0.986393
Target:  5'- ---aGCCUGGcccuGCCCCCCGgu-CCCUg -3'
miRNA:   3'- guaaUGGAUUc---UGGGGGGUacuGGGG- -5'
3577 5' -53.1 NC_001650.1 + 170026 0.66 0.986393
Target:  5'- uGUUGCCaGGGGCCagaaUCCAauaUGGCCUCc -3'
miRNA:   3'- gUAAUGGaUUCUGGg---GGGU---ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 35306 0.66 0.986393
Target:  5'- ---gGCC-AGGGCCacacgCCUGUGGCCCUg -3'
miRNA:   3'- guaaUGGaUUCUGGg----GGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 7933 0.66 0.986393
Target:  5'- ---gGCUaguGGACauCCCCCAUugGGCCCCc -3'
miRNA:   3'- guaaUGGau-UCUG--GGGGGUA--CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 88950 0.66 0.986393
Target:  5'- ---gACUUcgAGGGCCUCCCGccGGCCCUc -3'
miRNA:   3'- guaaUGGA--UUCUGGGGGGUa-CUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 86343 0.66 0.986393
Target:  5'- ---aGCCUcagcccgaggugAAGACCaCCCCcu-ACCCCa -3'
miRNA:   3'- guaaUGGA------------UUCUGG-GGGGuacUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 3319 0.66 0.986393
Target:  5'- uGUUGCCaGGGGCCagaaUCCAauaUGGCCUCc -3'
miRNA:   3'- gUAAUGGaUUCUGGg---GGGU---ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 114562 0.66 0.986393
Target:  5'- ---gGCCUAAGGCCaagagCCUCAagcUGACCUUu -3'
miRNA:   3'- guaaUGGAUUCUGG-----GGGGU---ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 154332 0.66 0.986393
Target:  5'- ---aGCUUAucGCCCCCCAgcaGCUCCa -3'
miRNA:   3'- guaaUGGAUucUGGGGGGUac-UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 181081 0.66 0.986229
Target:  5'- ----cCCUGAacacguuGGCCCCCCuUGACCa- -3'
miRNA:   3'- guaauGGAUU-------CUGGGGGGuACUGGgg -5'
3577 5' -53.1 NC_001650.1 + 14374 0.66 0.986229
Target:  5'- ----cCCUGAacacguuGGCCCCCCuUGACCa- -3'
miRNA:   3'- guaauGGAUU-------CUGGGGGGuACUGGgg -5'
3577 5' -53.1 NC_001650.1 + 141011 0.66 0.985211
Target:  5'- ---gACgUAGGcagaagagcuacacGCCCCCCucugaccgccgguUGACCCCg -3'
miRNA:   3'- guaaUGgAUUC--------------UGGGGGGu------------ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 53648 0.66 0.985211
Target:  5'- ---gACgUAGGcagaagagcuacacGCCCCCCucugaccgccgguUGACCCCg -3'
miRNA:   3'- guaaUGgAUUC--------------UGGGGGGu------------ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 16148 0.66 0.984682
Target:  5'- ---cACUgagAAGGCCUgCCCAcUGACCUCa -3'
miRNA:   3'- guaaUGGa--UUCUGGG-GGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 182855 0.66 0.984682
Target:  5'- ---cACUgagAAGGCCUgCCCAcUGACCUCa -3'
miRNA:   3'- guaaUGGa--UUCUGGG-GGGU-ACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 56023 0.66 0.984682
Target:  5'- ---cACCcccaACUCCCC-UGGCCCCa -3'
miRNA:   3'- guaaUGGauucUGGGGGGuACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 76672 0.66 0.984682
Target:  5'- aCAUggGCC-AcuGCaCCCCCGUGGCCUUg -3'
miRNA:   3'- -GUAa-UGGaUucUG-GGGGGUACUGGGG- -5'
3577 5' -53.1 NC_001650.1 + 174241 0.66 0.984138
Target:  5'- uUAUUGCCcAAGG-CCCUCAUGcauauuuauugagcACCCCc -3'
miRNA:   3'- -GUAAUGGaUUCUgGGGGGUAC--------------UGGGG- -5'
3577 5' -53.1 NC_001650.1 + 7534 0.66 0.984138
Target:  5'- uUAUUGCCcAAGG-CCCUCAUGcauauuuauugagcACCCCc -3'
miRNA:   3'- -GUAAUGGaUUCUgGGGGGUAC--------------UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.