Results 21 - 40 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3580 | 3' | -57.2 | NC_001650.1 | + | 8144 | 0.76 | 0.354037 |
Target: 5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3' miRNA: 3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174851 | 0.76 | 0.354037 |
Target: 5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3' miRNA: 3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 71897 | 0.75 | 0.38611 |
Target: 5'- gGGGGCCAGggacUGGGGGauguUGCCCACc--- -3' miRNA: 3'- -UCCCGGUU----ACCCCCg---AUGGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 172551 | 0.75 | 0.402849 |
Target: 5'- gGGGGUCuaaGGGGGCcGCCCACUc-- -3' miRNA: 3'- -UCCCGGuuaCCCCCGaUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173491 | 0.75 | 0.402849 |
Target: 5'- uGGcCCAAUGGGGGCUuagggguacuGCCCACUc-- -3' miRNA: 3'- uCCcGGUUACCCCCGA----------UGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 5844 | 0.75 | 0.402849 |
Target: 5'- gGGGGUCuaaGGGGGCcGCCCACUc-- -3' miRNA: 3'- -UCCCGGuuaCCCCCGaUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 58760 | 0.74 | 0.428803 |
Target: 5'- cGGGGCCAagGGGGGCgacACCCcCa--- -3' miRNA: 3'- -UCCCGGUuaCCCCCGa--UGGGuGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 6157 | 0.74 | 0.455716 |
Target: 5'- uGGGaGCUAA-GGGGGaCUGCCCACUc-- -3' miRNA: 3'- -UCC-CGGUUaCCCCC-GAUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 172864 | 0.74 | 0.455716 |
Target: 5'- uGGGaGCUAA-GGGGGaCUGCCCACUc-- -3' miRNA: 3'- -UCC-CGGUUaCCCCC-GAUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 127390 | 0.74 | 0.455716 |
Target: 5'- cGGGGCCGAUgGGGGGUUGgCCAa---- -3' miRNA: 3'- -UCCCGGUUA-CCCCCGAUgGGUgauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 169473 | 0.73 | 0.474156 |
Target: 5'- aGGGGUCA-UGGGGGagUGCCCAUaAAGg -3' miRNA: 3'- -UCCCGGUuACCCCCg-AUGGGUGaUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 2766 | 0.73 | 0.474156 |
Target: 5'- aGGGGUCA-UGGGGGagUGCCCAUaAAGg -3' miRNA: 3'- -UCCCGGUuACCCCCg-AUGGGUGaUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 6503 | 0.73 | 0.512103 |
Target: 5'- uAGGGaCCcagGGGGaGUUGCCCACUAc- -3' miRNA: 3'- -UCCC-GGuuaCCCC-CGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173210 | 0.73 | 0.512103 |
Target: 5'- uAGGGaCCcagGGGGaGUUGCCCACUAc- -3' miRNA: 3'- -UCCC-GGuuaCCCC-CGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 130080 | 0.73 | 0.512103 |
Target: 5'- gAGGGCCGGggagGGGGGagagccGCCCGCcAAGc -3' miRNA: 3'- -UCCCGGUUa---CCCCCga----UGGGUGaUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 129139 | 0.73 | 0.521789 |
Target: 5'- cGGGGCCGAggacacGGGGGCgGCCCuCUucGc -3' miRNA: 3'- -UCCCGGUUa-----CCCCCGaUGGGuGAuuC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 6800 | 0.72 | 0.535465 |
Target: 5'- uGGGCaauaaagcccaugccCAAUGGGGGCUuagggguacuGCCCACUc-- -3' miRNA: 3'- uCCCG---------------GUUACCCCCGA----------UGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 92837 | 0.72 | 0.551246 |
Target: 5'- aAGGGCCAGgugGaGGGGCU-CCCGgUAc- -3' miRNA: 3'- -UCCCGGUUa--C-CCCCGAuGGGUgAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 101807 | 0.72 | 0.551246 |
Target: 5'- uGGGGaaGA--GGGGCUGCCCGCUGGc -3' miRNA: 3'- -UCCCggUUacCCCCGAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 139112 | 0.72 | 0.561181 |
Target: 5'- gGGGGUUAGUGGGGGUauguagugUACCCAg---- -3' miRNA: 3'- -UCCCGGUUACCCCCG--------AUGGGUgauuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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