miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 5' -59 NC_001650.1 + 24506 0.66 0.843095
Target:  5'- ----cAGGGuGGCgGUCCuGCUCcUGCCCg -3'
miRNA:   3'- cagauUCCC-CCGgCGGG-UGAG-AUGGG- -5'
3580 5' -59 NC_001650.1 + 7591 0.66 0.843095
Target:  5'- -----uGGGGGCUGucccacCCCACuuuccuaauaagUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGGC------GGGUG------------AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 174298 0.66 0.843095
Target:  5'- -----uGGGGGCUGucccacCCCACuuuccuaauaagUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGGC------GGGUG------------AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 36081 0.66 0.837567
Target:  5'- ---aGAGGGGGUggagguguaccagUGCCCcucggagcuggaccuGCUCUACCUc -3'
miRNA:   3'- cagaUUCCCCCG-------------GCGGG---------------UGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 144903 0.66 0.835171
Target:  5'- cUCUAuugguGGGuGGCCgggGCCU-CUUUACCCg -3'
miRNA:   3'- cAGAUu----CCC-CCGG---CGGGuGAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 34663 0.66 0.835171
Target:  5'- -----cGGcuccuGGGCCGCCCuCUCcACCCc -3'
miRNA:   3'- cagauuCC-----CCCGGCGGGuGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 71886 0.66 0.835171
Target:  5'- -aCUGGGGGauGuuGCCCACcaUGCCCc -3'
miRNA:   3'- caGAUUCCCc-CggCGGGUGagAUGGG- -5'
3580 5' -59 NC_001650.1 + 74533 0.66 0.835171
Target:  5'- uGUUUGgcAGGGaGGCCGCC-AC-CgugGCCCu -3'
miRNA:   3'- -CAGAU--UCCC-CCGGCGGgUGaGa--UGGG- -5'
3580 5' -59 NC_001650.1 + 65049 0.66 0.834369
Target:  5'- -cCgcAGGGGGgCGCUCugUCagauccuugaagaUGCCCu -3'
miRNA:   3'- caGauUCCCCCgGCGGGugAG-------------AUGGG- -5'
3580 5' -59 NC_001650.1 + 131863 0.66 0.827073
Target:  5'- -cCUGuGGGGGUcagacggguucgCGCCC-CUCUuCCCu -3'
miRNA:   3'- caGAUuCCCCCG------------GCGGGuGAGAuGGG- -5'
3580 5' -59 NC_001650.1 + 63101 0.66 0.826254
Target:  5'- aUCUcuGGGGGUCGCgCCcccggguGCUCcggaGCCCc -3'
miRNA:   3'- cAGAuuCCCCCGGCG-GG-------UGAGa---UGGG- -5'
3580 5' -59 NC_001650.1 + 87113 0.66 0.818809
Target:  5'- -gUUGGGGGGGauGCCCuGCUCgagcACCUu -3'
miRNA:   3'- caGAUUCCCCCggCGGG-UGAGa---UGGG- -5'
3580 5' -59 NC_001650.1 + 170371 0.66 0.810386
Target:  5'- cGUCac--GGGG-CGuCCCGCUCUGCCa -3'
miRNA:   3'- -CAGauucCCCCgGC-GGGUGAGAUGGg -5'
3580 5' -59 NC_001650.1 + 3664 0.66 0.810386
Target:  5'- cGUCac--GGGG-CGuCCCGCUCUGCCa -3'
miRNA:   3'- -CAGauucCCCCgGC-GGGUGAGAUGGg -5'
3580 5' -59 NC_001650.1 + 70008 0.66 0.810386
Target:  5'- aGUCUAGGGGGugugaCCGCCaAC-CUggacGCCCu -3'
miRNA:   3'- -CAGAUUCCCCc----GGCGGgUGaGA----UGGG- -5'
3580 5' -59 NC_001650.1 + 59479 0.66 0.810386
Target:  5'- aUCUcGGGGGGCa-CCUuC-CUGCCCa -3'
miRNA:   3'- cAGAuUCCCCCGgcGGGuGaGAUGGG- -5'
3580 5' -59 NC_001650.1 + 45144 0.66 0.810386
Target:  5'- -cCUGAGcaGGGGCUaggugagaaGCUCACagCUACCCu -3'
miRNA:   3'- caGAUUC--CCCCGG---------CGGGUGa-GAUGGG- -5'
3580 5' -59 NC_001650.1 + 165733 0.66 0.80181
Target:  5'- uUCUcGGGGGGCCcggGgCgGCUCUuagGCCUa -3'
miRNA:   3'- cAGAuUCCCCCGG---CgGgUGAGA---UGGG- -5'
3580 5' -59 NC_001650.1 + 106362 0.66 0.80181
Target:  5'- gGUC--AGGGGGCUguggGUCCACUUgACCa -3'
miRNA:   3'- -CAGauUCCCCCGG----CGGGUGAGaUGGg -5'
3580 5' -59 NC_001650.1 + 158257 0.66 0.80181
Target:  5'- gGUUUcc-GGGGCCGCCUgcggcguguACUCUgugACCCc -3'
miRNA:   3'- -CAGAuucCCCCGGCGGG---------UGAGA---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.